| Previous changeset 0:ba913054bbff (2017-12-26) Next changeset 2:77e8e7bc5b44 (2017-12-27) |
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Commit message:
fix wrong input type error |
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modified:
rmarkdown_flagstat.xml |
| b |
| diff -r ba913054bbff -r c5c626653593 rmarkdown_flagstat.xml --- a/rmarkdown_flagstat.xml Tue Dec 26 19:27:41 2017 -0500 +++ b/rmarkdown_flagstat.xml Tue Dec 26 20:42:47 2017 -0500 |
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| @@ -11,16 +11,16 @@ <stdio> <regex source="stderr" match="XXX" level="warning" description="Check the warnings_and_errors.txt file for more details."/> </stdio> - <command><![CDATA[ - Rscript '${__tool_directory__}/tool_template_render.R' - -e $echo - -r $report - -d $report.files_path - -s $sink_message - -t '${__tool_directory__}/tool_template.Rmd + <command><![CDATA[ Rscript '${__tool_directory__}/tool_template_render.R' + -e $echo + -b $input_bam + -r $report + -d $report.files_path + -s $sink_message + -t '${__tool_directory__}/tool_template.Rmd ]]></command> <inputs> - <param type="integer" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/> + <param type="boolean" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/> <param type="data" name="input_bam" label="BAM file" optional="False" format="bam"/> </inputs> <outputs> |