| Previous changeset 13:d18e7a6e5cd4 (2024-03-14) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de |
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modified:
macros.xml remove_confounders.xml |
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| diff -r d18e7a6e5cd4 -r c65fce500915 macros.xml --- a/macros.xml Thu Mar 14 15:38:16 2024 +0000 +++ b/macros.xml Sat May 18 18:30:17 2024 +0000 |
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| @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">1.9.6</token> - <token name="@VERSION_SUFFIX@">2</token> - <token name="@profile@">22.05</token> + <token name="@VERSION_SUFFIX@">3</token> + <token name="@profile@">21.09</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement> |
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| diff -r d18e7a6e5cd4 -r c65fce500915 remove_confounders.xml --- a/remove_confounders.xml Thu Mar 14 15:38:16 2024 +0000 +++ b/remove_confounders.xml Sat May 18 18:30:17 2024 +0000 |
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| @@ -180,7 +180,7 @@ inspired by Seurat's `regressOut` function in R. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.regress_out.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.regress_out.html>`__ Correct batch effects by matching mutual nearest neighbors, using `pp.mnn_correct` ================================================================================== @@ -200,7 +200,7 @@ Corrects for batch effects by fitting linear models, gains statistical power via an EB framework where information is borrowed across genes. This uses the implementation of ComBat More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.combat.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.combat.html>`__ ]]></help> |