| Previous changeset 14:ef71f5982df5 (2015-03-30) Next changeset 16:dd337a830b5c (2015-03-30) |
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Commit message:
Avoid relative paths, and rename "ncbi" dir |
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modified:
tool_dependencies.xml |
| b |
| diff -r ef71f5982df5 -r c71031b17e08 tool_dependencies.xml --- a/tool_dependencies.xml Mon Mar 30 14:43:05 2015 -0400 +++ b/tool_dependencies.xml Mon Mar 30 15:05:20 2015 -0400 |
| b |
| @@ -3,23 +3,23 @@ <package name="sra_toolkit" version="2.4.5"> <install version="1.0"> <actions> - <action type="make_directory">ncbi</action> - <action type="make_directory">ncbi/build</action> - <action type="change_directory">ncbi</action> + <action type="make_directory">src</action> + <action type="make_directory">build</action> + <action type="change_directory">src</action> <action type="shell_command">git clone https://github.com/ncbi/sra-tools.git</action> <action type="shell_command">git clone https://github.com/ncbi/ncbi-vdb.git</action> <action type="shell_command">git clone https://github.com/ncbi/ngs.git</action> <action type="shell_command">LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib</action> <action type="change_directory">ncbi-vdb</action> <action type="shell_command">git checkout bf5ffdd</action> - <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=../build</action> + <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build</action> <action type="change_directory">../ngs</action> <action type="shell_command">git checkout 3a7a0ed</action> <action type="change_directory">ngs-sdk</action> - <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=../../build</action> + <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build</action> <action type="change_directory">../../sra-tools</action> <action type="shell_command">git checkout 4ef7ea0</action> - <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=../build --with-ncbi-vdb-build=../build --with-ncbi-vdb-sources=../ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR --with-magic-prefix=/dev/null</action> + <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR --with-magic-prefix=/dev/null</action> <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/ncbi/default.kfg</action> </actions> </install> |