| Next changeset 1:b25b0f210e10 (2016-08-04) |
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Commit message:
Uploaded |
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added:
filter_fasta.xml |
| b |
| diff -r 000000000000 -r c8b26d6d385b filter_fasta.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/filter_fasta.xml Thu Aug 04 12:08:28 2016 -0400 |
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| @@ -0,0 +1,33 @@ +<tool id="filterfasta" name="Filter FASTA"> + <description></description> + <command interpreter="python">filter_fatsa.py $input1 $input2 $output</command> + <inputs> + <param format="txt" name="input1" type="data" label="FASTA Database"/> + <param format="txt" name="input2" type="data" label="Scaffold Report"/> + </inputs> + <outputs> + <data format="txt" name="output" label="Merged Scaffold Report"/> + </outputs> + <stdio> + <regex match="Error|error" + source="stdout" + level="fatal" + description="Unknown error"/> + <regex match="Error|error" + source="stderr" + level="fatal" + description="Unknown error"/> + <regex match="Error: bad bait" + source="stdout" + level="fatal" + description="Error: bad bait"/> + </stdio> + <tests> + <test> + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> + </test> + </tests> + <help> + </help> +</tool> \ No newline at end of file |