| Previous changeset 0:61780259e2fb (2016-10-21) Next changeset 2:f3f230290ffe (2016-10-21) |
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Commit message:
Uploaded |
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added:
computeR2.xml |
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| diff -r 61780259e2fb -r c8ba405ffd13 computeR2.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/computeR2.xml Fri Oct 21 06:24:32 2016 -0400 |
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| @@ -0,0 +1,36 @@ +<tool id="computeR2" name="compute R2" version="1.0.0"> + <description>compute R-squared value of a prediction vs true phenotype</description> + <command interpreter="Rscript"> + computeR2.R $config + </command> + + <inputs> + <param name="phenotype" type="data" + label="true phenotype" + /> + + <param name="predictedPhenotype" type="data" + label="predicted phenotype" + /> + + </inputs> + + <configfiles> + <configfile name="config"> +## Desc: this file is sourced in encode wrapper script +## as means to pass all galaxy params to R +"${predictedPhenotype}" -> predicted +"${phenotype}" -> phenotype +"${r2}" -> out + + </configfile> +</configfiles> + +<outputs> + <data format="tabular" name = "r2" /> +</outputs> + + <help> + compute R2 of prediction vs true phenotype + </help> + </tool> \ No newline at end of file |