| Previous changeset 1:ccfa8e539bdf (2015-08-24) Next changeset 3:0e0ff9e9c761 (2015-09-28) |
|
Commit message:
fix discard file |
|
modified:
STACKS_procrad.py STACKS_procrad.xml tool_dependencies.xml |
| b |
| diff -r ccfa8e539bdf -r c9e10e0d6c10 STACKS_procrad.py --- a/STACKS_procrad.py Mon Aug 24 10:09:14 2015 +0000 +++ b/STACKS_procrad.py Mon Aug 24 15:39:12 2015 +0000 |
| b |
| @@ -36,6 +36,7 @@ parser.add_argument('--outype') parser.add_argument('--qualitenc') parser.add_argument('-D', action='store_true') + parser.add_argument('--discard_file') parser.add_argument('-t') parser.add_argument('-q', action='store_true') parser.add_argument('--activate_advanced_options') |
| b |
| diff -r ccfa8e539bdf -r c9e10e0d6c10 STACKS_procrad.xml --- a/STACKS_procrad.xml Mon Aug 24 10:09:14 2015 +0000 +++ b/STACKS_procrad.xml Mon Aug 24 15:39:12 2015 +0000 |
| b |
| @@ -53,6 +53,7 @@ --qualitenc $options_quality.qualitenc #if $capture: -D + --discard_file $discard_file #end if --activate_advanced_options $activate_advanced_options -t $options_advanced.truncate @@ -244,8 +245,6 @@ <data format="fastq" name="discard_file" label="discard.fastq with ${tool.name} on ${on_string}: demultiplexed and cleaned reads "> <filter>capture</filter> </data> - - </outputs> <stdio> |
| b |
| diff -r ccfa8e539bdf -r c9e10e0d6c10 tool_dependencies.xml --- a/tool_dependencies.xml Mon Aug 24 10:09:14 2015 +0000 +++ b/tool_dependencies.xml Mon Aug 24 15:39:12 2015 +0000 |
| b |
| @@ -10,4 +10,3 @@ <repository name="package_velvet_1_2_10" changeset_revision="1c500c3e7fdf" owner="rjullien" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu/" /> </package> </tool_dependency> - |