| Previous changeset 29:53dc6aef5441 (2023-08-03) Next changeset 31:be1f407e1018 (2023-08-03) |
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Commit message:
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty |
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modified:
cluster_table2krona_format.xml extract_files_from_re_archive.xml fasta_affixer.xml fasta_interlacer.xml fastq_name_affixer.xml pairScan.xml renameSequences.xml |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 cluster_table2krona_format.xml --- a/cluster_table2krona_format.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/cluster_table2krona_format.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -1,4 +1,7 @@ <tool id="cluster_table2krona_format" name="Convert RepeatExplorer2 CLUSTER_table.csv to Krona formatted input " version="1.0.0.3" python_template_version="3.5"> + <requirements> + <requirement type="package" version="3">python</requirement> + </requirements> <required_files> <include type="literal" path="cluster_table2krona_format.py"/> </required_files> |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 extract_files_from_re_archive.xml --- a/extract_files_from_re_archive.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/extract_files_from_re_archive.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -1,5 +1,5 @@ <tool id="extract_var_files_from_re" - name="Extract various files from RepeatExplorer2 archive" version="1.0.0.3"> + name="Extract various files from RepeatExplorer2 archive" version="1.0.0.4"> <command detect_errors="exit_code"> <![CDATA[ |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 fasta_affixer.xml --- a/fasta_affixer.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/fasta_affixer.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -1,5 +1,8 @@ -<tool id="fasta_affixer" name="FASTA read name affixer" version="1.0.0.3"> +<tool id="fasta_affixer" name="FASTA read name affixer" version="1.0.0.4"> <description>Appending suffix and prefix to the read names</description> + <requirements> + <requirement type="package" version="3">python</requirement> + </requirements> <required_files> <include type="literal" path="fasta_affixer.py"/> </required_files> |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 fasta_interlacer.xml --- a/fasta_interlacer.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/fasta_interlacer.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -1,5 +1,8 @@ -<tool id="fasta_interlacer" name="FASTA interlacer" version="1.0.0.3"> +<tool id="fasta_interlacer" name="FASTA interlacer" version="1.0.0.4"> <description>Join pared reads into single file</description> + <requirements> + <container type="package" version="3">python</container> + </requirements> <required_files> <include type="literal" path="fasta_interlacer.py"/> </required_files> |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 fastq_name_affixer.xml --- a/fastq_name_affixer.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/fastq_name_affixer.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -1,5 +1,8 @@ -<tool id="names_affixer" name="FASTQ Read name affixer" version="1.0.0.3"> +<tool id="names_affixer" name="FASTQ Read name affixer" version="1.0.0.4"> <description>Tool appending suffix and prefix to sequences names</description> + <requirements> + <requirement type="package" version="3">python</requirement> + </requirements> <required_files> <include type="literal" path="name_affixer.py"/> </required_files> |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 pairScan.xml --- a/pairScan.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/pairScan.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -2,6 +2,7 @@ <tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0.3"> <description> Scan paired-end reads for overlap </description> <requirements> + <container type="package" version="3">python</container> <requirement type="package">python-levenshtein</requirement> </requirements> <required_files> |
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| diff -r 53dc6aef5441 -r cab41d23e2a3 renameSequences.xml --- a/renameSequences.xml Thu Aug 03 07:32:40 2023 +0000 +++ b/renameSequences.xml Thu Aug 03 08:40:38 2023 +0000 |
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| @@ -2,6 +2,9 @@ <description>Rename sequences using numerical counter, keep required prefix and pair information </description> + <requirements> + <requirement type="package" version="3">python</requirement> + </requirements> <required_files> <include type="literal" path="renameSequences2.py"/> </required_files> |