| Previous changeset 1:7e2debc267eb (2020-01-06) Next changeset 3:3f7c9be3edde (2020-01-24) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/drep commit eaae9983f0339c4624431f4f843e319f83814490" |
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modified:
drep_compare.xml drep_dereplicate.xml macros.xml |
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added:
test-data/Enterococcus_casseliflavus_EC20.fasta test-data/Enterococcus_faecalis_T2.fna test-data/Enterococcus_faecalis_TX0104.fa |
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| diff -r 7e2debc267eb -r cb2fc9f60381 drep_compare.xml --- a/drep_compare.xml Mon Jan 06 15:18:20 2020 -0500 +++ b/drep_compare.xml Wed Jan 08 13:01:03 2020 -0500 |
| [ |
| @@ -24,9 +24,12 @@ <outputs> <expand macro="common_outputs" /> </outputs> + <tests> + <expand macro="test_defaults_log"> + <has_text text="dRep compare finished" /> + </expand> + </tests> <help><![CDATA[ - TODO: Fill in help. - usage: drep compare [-p PROCESSORS] [-d] [-h] [-ms MASH_SKETCH] [--S_algorithm {ANIn,goANI,ANImf,gANI}] [-n_PRESET {normal,tight}] [-pa P_ANI] [-sa S_ANI] |
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| diff -r 7e2debc267eb -r cb2fc9f60381 drep_dereplicate.xml --- a/drep_dereplicate.xml Mon Jan 06 15:18:20 2020 -0500 +++ b/drep_dereplicate.xml Wed Jan 08 13:01:03 2020 -0500 |
| [ |
| @@ -31,9 +31,12 @@ </collection> <expand macro="drep_outputs" /> </outputs> + <tests> + <expand macro="test_defaults_log"> + <has_text text="dRep dereplicate finished" /> + </expand> + </tests> <help><![CDATA[ - TODO: Fill in help. - usage: drep dereplicate [-p PROCESSORS] [-d] [-h] [-l LENGTH] [-comp COMPLETENESS] [-con CONTAMINATION] [--ignoreGenomeQuality] [-ms MASH_SKETCH] @@ -53,6 +56,7 @@ [--genomeInfo GENOMEINFO] work_directory + @GENOMES_HELP@ @FILTERING_HELP@ @GENOME_COMPARISON_HELP@ |
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| diff -r 7e2debc267eb -r cb2fc9f60381 macros.xml --- a/macros.xml Mon Jan 06 15:18:20 2020 -0500 +++ b/macros.xml Wed Jan 08 13:01:03 2020 -0500 |
| [ |
| @@ -313,20 +313,44 @@ </data> </xml> + + <xml name="test_defaults_log"> + <test> + <param name="genomes" ftype="fasta" value="Enterococcus_casseliflavus_EC20.fasta,Enterococcus_faecalis_T2.fna,Enterococcus_faecalis_TX0104.fa"/> + <output name="log"> + <assert_contents> + <yield/> + </assert_contents> + </output> + </test> + </xml> + <token name="@GENOMES_HELP@"><![CDATA[ I/O PARAMETERS: -g [GENOMES [GENOMES ...]], --genomes [GENOMES [GENOMES ...]] - genomes to cluster in .fasta format (default: None) + genomes to cluster in .fasta format + (default: None) + + ]]></token> <token name="@FILTERING_HELP@"><![CDATA[ FILTERING OPTIONS: -l LENGTH, --length LENGTH - Minimum genome length (default: 50000) + Minimum genome length + (default: 50000) + + -comp COMPLETENESS, --completeness COMPLETENESS - Minumum genome completeness (default: 75) + Minumum genome completeness + (default: 75) + + -con CONTAMINATION, --contamination CONTAMINATION - Maximum genome contamination (default: 25) + Maximum genome contamination + (default: 25) + + --ignoreGenomeQuality Don't run checkM or do any quality filtering. NOT RECOMMENDED! This is useful for use with @@ -341,12 +365,14 @@ GENOME COMPARISON PARAMETERS: -ms MASH_SKETCH, --MASH_sketch MASH_SKETCH MASH sketch size (default: 1000) + --S_algorithm {goANI,ANIn,ANImf,gANI} Algorithm for secondary clustering comaprisons: ANImf = (RECOMMENDED) Align whole genomes with nucmer; filter alignment; compare aligned regions ANIn = Align whole genomes with nucmer; compare aligned regions gANI = Identify and align ORFs; compare aligned ORFS - (default: ANImf) + (default: ANImf) + -n_PRESET {normal,tight} Presets to pass to nucmer tight = only align highly conserved regions @@ -360,12 +386,14 @@ ANI threshold to form primary (MASH) clusters (default: 0.9) -sa S_ANI, --S_ani S_ANI - ANI threshold to form secondary clusters (default: - 0.99) + ANI threshold to form secondary clusters + (default: 0.99) + --SkipMash Skip MASH clustering, just do secondary clustering on all genomes (default: False) - --SkipSecondary Skip secondary clustering, just perform MASH - clustering (default: False) + --SkipSecondary Skip secondary clustering, just perform MASH clustering + (default: False) + -nc COV_THRESH, --cov_thresh COV_THRESH Minmum level of overlap between genomes when doing secondary comparisons (default: 0.1) @@ -374,7 +402,8 @@ (for ANIn/ANImf only; gANI can only do larger method) total = 2*(aligned length) / (sum of total genome lengths) larger = max((aligned length / genome 1), (aligned_length / genome2)) - (default: larger) + (default: larger) + --clusterAlg CLUSTERALG Algorithm used to cluster genomes (passed to scipy.cluster.hierarchy.linkage (default: average) @@ -398,17 +427,26 @@ -sizeW SIZE_WEIGHT, --size_weight SIZE_WEIGHT weight of log(genome size) (default: 0) + ]]></token> <token name="@TAXONOMY_HELP@"><![CDATA[ TAXONOMY: - --run_tax generate taxonomy information (Tdb) (default: False) + --run_tax generate taxonomy information (Tdb) + (default: False) + --tax_method {percent,max} Method of determining taxonomy percent = The most descriptive taxonimic level with at least (per) hits - max = The centrifuge taxonomic level with the most overall hits (default: percent) + max = The centrifuge taxonomic level with the most overall hits + (default: percent) + + -per PERCENT, --percent PERCENT - minimum percent for percent method (default: 50) + minimum percent for percent method + (default: 50) + + --cent_index CENT_INDEX path to centrifuge index (for example, /home/mattolm/download/centrifuge/indices/b+h+v |
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| diff -r 7e2debc267eb -r cb2fc9f60381 test-data/Enterococcus_casseliflavus_EC20.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Enterococcus_casseliflavus_EC20.fasta Wed Jan 08 13:01:03 2020 -0500 |
| b |
| b'@@ -0,0 +1,48964 @@\n+>gi|478483683|ref|NC_020995.1| Enterococcus casseliflavus EC20, complete genome\n+AAAGTATTTTTTTCTAACCTTTTTTATCGTAATCTGTGGAAAACTTTTTCAATCCGTGCTATTTTAGTTA\n+TATCTATTCTTAGTTATAGGAGGACAATTTATGCCATCTGCTGATTCTATTTGGCAAGATCTTCAACGTT\n+CCTTTAAAGAAGAGCTGAATCCGGCCAGTTATAGTGCTTGGATCGAGACTGCCAATGTCTTGTCGTTTGA\n+AAAAAATCAGCTGCTGATCGAAGTACCCAGCGATCTTCATAAATCTTATTGGGAAAAAAATCTAGCTGCC\n+AAAATTGTTGAAATGGGATTTATGAAAACTGGTGAAGAATTGATTCCTAGTTTTGTGACTGTCGAAGAAG\n+CAGAAGCTTTAAAAACAGCCCCTTCTACTATTCAAACAGCTGCAGAAGAAAACGAGCGGCCGCCGAAATC\n+GATCTTAAATGAAAAATACACATTTGATACCTTTGTCATCGGGAAAGGCAATCAGATGGCCCACGCTGCT\n+GCTTTAGTTGTTGCAGAAGATCCTGGGTCTATTTATAATCCGCTGTTCTTCTATGGTGGCGTTGGTTTAG\n+GGAAAACCCACTTGATGCACGCGATCGGTCATCAAATGTTGCTGAAACGTCCCAATGCCAAAATCAAGTA\n+TGTTAGTAGTGAAAATTTCACCAATGATTTCATTACTTCTATTCAAAAGAACAAAATGGAAGATTTTCGA\n+AACGAATACCGCAATGTTGATCTTTTGCTGGTGGATGATATTCAATTCTTAGTCAATAAAGAAGGAACCC\n+AAGAAGAATTCTTTAATACCTTCGAAGAACTGTATCGCAATAATAAACAGATCGTTCTGACAAGTGATCG\n+TTTGCCAAATGAGATCCCGACTTTGCCGGAACGTTTGGTTTCCCGTTTTGCTTGGGGCTTGTCCGTTGAT\n+ATCACCCCGCCGGATCTAGAGACGCGGACTGCGATTTTGCGGAAAAAAGCCGAAGCCGAACGCTTGGAGA\n+TCCCCGACGATACCTTAAGTTATATCGCTGGGCAGATCGATTCGAATATCCGAGAACTTGAAGGAGCACT\n+CGTGCGGGTGCAAGCTTTTGCTACGATGCAAAACTCAGACATTACAACGAGCTTGGCAGCTGAAGCCATC\n+AAAGCCTTAAAATCAAGCCATGGCTCGACCCAAGTTTCGATTTTGCAAATCCAAGAAGAAGTCGCAAAAT\n+ACTATCACATTCATGTCAATGATCTAAAAGGGAAAAAACGGGTCAAAGGCATCGTGGTTCCACGGCAGAT\n+CGCGATGTATCTCTCTCGAGAATTGACCGATAGTTCTTTACCAAAAATCGGCGGCGAATTTGGCGGCAAA\n+GACCATACAACGGTCATTCATGCCCATGAAAAAATTCAGCATTTAGTCGAAACAGATCCCACGATCAAAA\n+ATGAGATCGCTGAAATCAAACAAATCCTCTTCAGCTGATCTGTGGATAAGAAAAGAAGAACCAAAAAAGT\n+TGTCCACAAGTTATTCACAGGCATTTTCGTTAGTCTAATCACTCTTTTCTCGAGTTATCCACATTACTAA\n+CAAGCCTATTACTACTATTACTTTTATTTAATAACTATAAATTAAAGGAGTATCGCTATGAAGCTAACTT\n+TAAACCGAACAGAGTTCATGCAAGAATTACAAACTGTCCAACGGGCGATTTCAACCAAAACCACCATCCC\n+GATCTTAACTGGAGTAAAATTATCCCTTTCAGAAAAAGGATTGACCATGACTGGGAGCAACGCCGATATT\n+TCCATTGAAACTTTTTTAAGTGTGGAAAACGAAAAAGCGCAAATGCAAATCGAAAAAACAGGAGCGATCG\n+TTTTACAAGCACGTTTCTTCAGTGAAATCGTTCGTCGTTTGCCTGAAAGTACCTTAACCTTAGAAGTATT\n+AGACAATAATCAAGTAGCGATCACTTCTGGAAAAGCCAACTTTACCGTCAACGGCTTGGATGCCGATAGT\n+TATCCACATTTACCAGTTGTCGAAAGTCAAGATTCGATCGAGATTCCAGCGCACGTGTTGAATAAGGTCG\n+TTAGTGAAACAGTCTTTGCGGTTTCGCAACACGAAAGCCGTCCGATCTTGACTGGGGTCCACTTTGTCTT\n+AGAAAATCAAAAATTATTAGCTGTTGCGACGGACTCACACCGTCTGAGCCAACGGGTGATTCCATTGGAA\n+AGTGGAGAAACAGCCTTCAACATCGTAATTCCTGGCAAAAGCTTAACGGAACTTTCTCGTTCCTTAACAG\n+ATGAAGAAGAAGCGATCCAAATCAGCATTATGGATAACCAAGTGTTGTTCCAAACGAAAACCATGAAATT\n+CTATTCTCGTTTATTGGAAGGAACTTACCCAGATACCAACCGTCTGATTCCTTCAAGCTTCAATACTGAG\n+ATTGAATTTTCTGTCCCAGAATTGTTACAAGCCATCGAACGGGCGTCATTGCTTTCTCATGAAGGCCGTA\n+ATAACATCGTTCGTTTGGCGATCTCCGAAGAAGCCGTTGTCTTATATGGAAACTCACCAGAAATCGGGAA\n+AGTCGAAGAAGATCTTTCTTTTGAAAAAGTGACCGGCGACCCATTAGAGATCTCTTTCAATCCTGACTAT\n+ATGAAAGCAGCACTACGAGCATTTGGTGACACCAGCATTGTGATCCGCTTTATCTCAGCGATCCGTCCCT\n+TTACATTGGAGCCGACAGAGAGCAAAGGCAGCTTTATCCAGCTGATCACACCGGTGCGAACCAACTAGTT\n+TTTCATGTCTTTTGAAAAAAGTTGAAACAATCATCTGAAAATGAATAAATGAGTTAAAAGGGCTTAAAAT\n+CGTTTTTAAGCCCTTTTTTCTATTTTGGCTTCTTTTTTGTCTAAAAGCAGTAAGTCTTCTGAGAATGAAA\n+AATATGCCGATGAATTTGTTTTCTTGGCAAAAAAAGAGTATAATAGAGCTAAACGCTCTTTGATAGAATT\n+GAGGGGAATTATGAAAATGCAAATACCGTTAGAAACGGAATACATGACACTTGGACAAATGCTCAAAGAA\n+GTCAGTGTGATCAGCAGCGGCGGCCAAGCGAAATGGTACCTTGCAGAGCACACCGTTTTTGTCGACGGCG\n+AGCCAGAAAATCGACGAGGGCGCAAATTGTATGCGGGAATGCGTGTTGAGCTACCTGATGAAGGTACTTT\n+TTTTATGGTGAAGAAGGAAGACGCCGATGCGCCTGAATGAGTTGCATTTAAGCAATTATCGGAACTATGA\n+TTCGCTGACACTGACTTTTGAGAAAGGTCTGGTCATTTTTTTAGGCGAAAACGCGCAAGGAAAAACCAAT\n+ATTTTAGAAAGTATCTATGTATTGGCGATGACCAAAAGCCACCGCACCTCCAGCGAGCAAGAGCTTATCC\n+GCTGGGACACAGAAGGTGCGCGGATCTCTGGCAGTGTCAGTCGGGGACGCTCAACGATCCCGTTAGAACT\n+GTTTTTGTCAAAAAAAGGACGAAAAACGAAAGTAAACCACATTGAGCAAAAAAAGCTCAGTAGTTACATA\n+GGGCAGTTGAATGTCATTTTATTTGCTCCAGAAGACCTCTCCCTTGTAAAAGGAAGTCCCCAAGTCCGCC\n+GTAAATTTCTCGATATGGAAATTGGGCAGATCGATCCAATCTATCTCTATGATCTCGTTCAATACCAATC\n+CGTTTTGAAACAGCGCAATCAATACTTAAAACAGCTGAATGAAAAAAAACAGACCGATGAGATCTATTTA\n+GATGTTTTGACGGAACAGCTGGTGGCTTTCGGCAGTAAAATCATTTTAGCCAGACAACGATTTGTTCAGC\n+GCTTGGCGT'..b'ACTGCGAGATTCATCGCCTTATCGGTCT\n+TGGCACGAATCAGGTCCATCACCGCCTCGGCTTGAGAAAGGTCAACCCGTCCGTTTAAAAAGGCCCGCTT\n+CGTGAATTCTCCCGGCTCAGCCAACCGTGCGCCTTGTCGCAAAACCAGCTGCAAGAGTTGATTGACGACA\n+ACGATCCCGCCGTGGCAGTTGATCTCAACGACATCTTCTCGGGTAAAGGTCCGCGGCTTTTTCATCACTG\n+ATAGCATCACTTCATCCATCAAACGGTTTTCTTCTGGGTCTACGATATGACCATAATGGATCGTATGACT\n+AGGGACTTGGGCGAGGGTTTTAGTGCCTGCTTGAAAAATCCGATCCGCAATTGCGATCGCTTTTTCCCCG\n+CTTAATCGCACAATACTGATGGCCCCTTCGCCTGGCGGGGTGGAAATCGCGGCAATCGTATCAAATTCTT\n+GCGTTATATTCGCCATGTTGCTTGCTCCTCCTATTTTTTCACATAAAAAAAGTGCCCACTCCACCCGTCA\n+AATTGATTGAAAATCAATAAAAACGAGTAGACTTAGCACTTTGACTGCTTGTCAATTAAATTCTGGAAAT\n+AGATTAGCACATTTTTGCGTGAGTCGCAAGCTTCCTTCAAAAACTTTTAAATTTTGCATCTGTCCGCAAA\n+AACCTTTAAAATAAAAGCAAAGAATAAGAAAAGAGGGATCTATTATGGAAACCATCAAATCATCAAACAG\n+CGCTGCTCGCATTAAAGAAATCATTTTATCGACAGGAAACGTGAATCGGCCTTACGTCGTGCGGGATATC\n+GTCTTTGCGGCAGACAAAATCGAAGTAGATCTATTTGATACATCTGTGAATTTGAACGATCTGTTGGCAG\n+ATGTGACCTATCGCTTAAAAGAAACCGCCCACAGCTACGGAGCGAATGCAGTGATCAACTGTCATTTCGA\n+ACATGACCGCATCGTCGAAGGCGACAAAACCTACCTTGAGATCTTTGCCTATGGTACAGTGGTTCAATTT\n+ACTCAATCAACCATCGGCGGCTAATTGCCTCTATCATCAAAGAAAAATACAAAAAAGAGTCCGCGGCATA\n+CGGACTCTTTTTTGATACCAAAGGCTGACCTACGTAACGTATGTTGACTTTGATAAGAATGATTTCTAGT\n+CAAGGATACTTGGTTTTAAATTTGTTGTCAATCGCTTTTTCCCATCAAAAAAGGGAAAGGCTTGTCAGAC\n+CGCCTTTCCCTTTTTTCATTAAATTCGTTTGTCCGCAGGTTCCACTACTAAGTAGCGATACGGTTCATCC\n+CCTTCAGAATGAGTTTGAACATACGCATCTTTACTCAAAACTGAATGGATCTGCTTTCTTTCAAACGCCG\n+GCATCGGTTCTAAAAAGACTGGGCGGCCTGTTCGTTTGACTTTTTCAGCAGTACGGCTAGCCAAACGTTC\n+TAAGATCGCTTGACGTTTTTCACGGTAATCTCCGACATTCACTACAATCGACAATTTGTTTTTCGCGATG\n+CGGTGAATATACACTTGCGCCAAATATTGCAGTGCATTCAAGGTTTTGCCGTGCTTCCCAATCAAAATGC\n+CTTGTTTTTGCGTTTCTAAATGAAAGACGACCACGCCGTCTTGACGAGCGGTTTTTACTAAGGCGGGTGC\n+ATTCAATGCTTTTGAAATATTTGTCAGATAGAGTCCCAGCTGAGCCAGCGCTTCCTCATCTGAAAGATCC\n+GTCAGCAAAACAGGTTCGCTCGCTGCTGCTTCCATCACACTGCTTGCATCCTCTGTCGTCACAGGATCTG\n+GTTCTACCAGCGGTTTTGCTGGTACTTCTTCAACGGGTGCCGGTTCTTCAACGATTCGTTTTTCAATGGA\n+GACCCTTGCTTGTTTTTTTCCTAGACCCAAGAAGCCTTTTTTTCCTTCATCCAGGACTTCGATTACTGCT\n+TGATCTTTGGTGATACCAAGGACTTGCAATCCCTCTTGAATTGCTTCATCTACTGTCAGATTTTCATAAA\n+TCGGCATTGCAGTGCAACCTCCTCTTATTTTTTCCGTTTCTTTTTAGGACTCATTGCTTTTTTCAGCGCA\n+CGTTCACGCTCGCGTTCTTTGCGGGCAGCTTCTTCTCTTTCTTGGCGAATCTTGAATGGGTTATTTAAGA\n+TCATTGTTTGCACAACTTGGAATGCATTGGAAACGACCCAGTACAAGGAAAGACCGCTGGCAATGTTGAT\n+CCCCATCAGTAAGATCATCATCGGCATAGCGAAATTCATGATTTTCAGACTCGCATTTGATTCCACTTGG\n+CTCATACTTGATAAGTAAGTACTTGCAAAAGTAAAGAGCGCCGCTAAAATCGGCAAGATGAAGTATGGGT\n+CACGATCACCCAGCTGCAGCCATAAGAATTTTCCTTCTTGCAGAGCAGGAACCCGTGAGATCGATTGCCA\n+CAAGGCCATCAAAATCGGCATTTGTACCAATAATGGCAGACAGCCGGCATAAGGATTGACATTGTTTTCC\n+GCATACAAACGTTGTGTTTCTTCTTTTAACTTGCTTTGTGTTTCTGTATCTTTTGACGCATATTGCTGTT\n+GCAGCGCTTTTAGCTTCGGTTGTAATTCTTGCGTTTTGCGCATGCTTTTGGTTTGGAAGTGCATCAACGG\n+CATCAAAATGACCCGAATGATCAATGTAAAGAGGATGATCCCGATCCCGGCATTGCCAAAGGAGAGGGCT\n+TTGATCGCCTCTGCAAAATAATAAACGATGTAACGGTCCCATAGACCAGTACTTTGTGCATTTACTTCAC\n+CTGTTGCACCGCAGGCAGATAAGACAACTACTAATGAGAGGACTCCCAAAAATAGTAAGACGCGTTTCCC\n+TTTTTTCACGTAACTAATTCCTTTCCATTAATGAATAATTTTGGCAAGTTTTAAGACATGCTCTAAATTC\n+GAGTAGATTTCCTTTGAGGAACAAGTGGCGATACTTGGACGGGCGATCACGATGAAATCGACCGCTGGTT\n+CGATTCGCGGCTTCATTTCCGTTAAACTTGCACGGATCTTGCGCTTGATCTCATTTCGCTTCACTGCATT\n+ACCGACTTTTTTCCCTACAGATAAACCAACTCGAAAATGTGATTGCTCTTTAGGTAAGACATACACCACG\n+AACTTCCGATTTGCAAAAGAATTTCCTGCCTGAAAAACTTTTTGAAAATCTTGCTCTGTTTTTACTCGAT\n+AGGATTTTCTCATCTTCGGTTCCTTCACTTCTTTCAATTAAGCTTCGCGAAACGGATTGAATCCGTAACC\n+ACTCACCTGTCAATAATACCATATTTGCCAAAAGTCAGACACTATATTCCGCAAAAACGGCATAAAAAAA\n+AACCACTGGCATTCAGTGGCTTACGCAGAAATAACCTTTCTGCCTTTACGACGACGGCTAGCTAAAACAC\n+GACGTCCATTTTTTGTACTCATACGTTTACGGAATCCGTGAACTTTTTGACGTTTACGTTTATTTGGTTG\n+ATACGTTCTTTTCATTTATTTCCACCTCCATCAGGATAATGCTTATGCGCACAGACATACTTTGATAGTA\n+TAACGAGTCAAGTACTAGTTTGTCAATAAGAAGTTTGCTCAAAATCAGGCATTCTTTATCCACAATCCCT\n+TTGATTTGTGTGGGTTTACTGTTTATAGCCAATTTTTGTGGATAACTTTTTCCCCAGAGTTATTTTGGCT\n+TTTTCCACAAACAAGCAGCCTGTAGAAAAGTTTTCCACAATCACTTTTTTAACTGTTGATAACTACCCCG\n+AAACCTAGTGTTATCAAGGTGTGATCTTCACATCGATCTGTGGATAAAGGAGATTGTTTTACAGTTATGC\n+ACATTCTTTTTCTACCTGTGGATAGTCGGATTTCGAACATGTGCATTTCCATTTTTCTTTTATCCCGTTT\n+TGTGGA\n+\n' 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| b |
| diff -r 7e2debc267eb -r cb2fc9f60381 test-data/Enterococcus_faecalis_T2.fna --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Enterococcus_faecalis_T2.fna Wed Jan 08 13:01:03 2020 -0500 |
| b |
| b'@@ -0,0 +1,40833 @@\n+>NZ_GG692854.1 Enterococcus faecalis T2 plasmid scaffold supercont1.22, whole genome shotgun sequence\n+TAAAATTAATGTGCCAGTCTTTTTTATCAAAACACCTATTAATAGAGGGGTATTTGAAGAGATCTTCGGCGAAACATTAA\n+AAGGATAGGGTGAAAAAAATGAGTAATAAAAATGAACACGGGTTTTGGGAATGGCTACAAATAGACTACTTTTCAAGGTT\n+TCCAGATGCAACGAATGATGATGTGACTAAATTCTTGTTACGCTTTACAGAAGCTAGTAAAAATTCAACCAAAGAAGGAT\n+CAAAAATCATTGAAGAATTGTTTGAGGAAGAACGAAAACGCAGAAAAGGACGGTGATTTTTCGATGAACGAACGTGAAAA\n+AGATATAAAAAAGTGGCTTTGCCAGTTATTAGATCAGACCTACCTAAATGCGGAAGCGTATAAAAATTTTTTTGTAAGAG\n+TTCTTCCAAAACAGCGTAAACGGACACTTGGTAACTATTTAGAAGTAGAACGTGTATTAGAAGTGAGCAATTTGTTACGA\n+GAGCCTGTGGAAGTCATGCTGACACTGATACGCTTATTAGCTGCTCATATTGTTGTTGTTAATCGTGAGCAATTTCAAGA\n+GGAAGAAGCAAAAGAGAAAATAGTGAAGGAATTATTAGGGGAATTGCTTAAGCAAGGGAAAATTAGTCAAAAAGAACAAA\n+CAATTATGTTAGGCACTGGTTTTTTAGAAGAAGAAACTGCTCTTTATGGCGAGTTAGAAAGTTGGGCGACTGATGCGAAA\n+GAAACCATTTATTGTACGGTAGTTGAGAATGGCTTCCCTATTAAAATGGAGTTACACAAACTTGGGTATCAATGGCTAAA\n+AAGTCGCCAAGCTTGGGTGAAAAGTTACGAGACACAAGAAGCTGCTGAAGTCGCCAAAGGTCAGCTTTGGGCATTAAGTA\n+GTGAAATAGAAGTTAGTGTAGAGACACCGATTACTTGTTTGTTTCATTTTGATTATTATTTATCCGTTAAGCCAGCGGAA\n+CGTTACAATGAAACGATTGTTGCTTTTGGGTATATCTATGAAAATTACGGCTTTAAAAAGAAATTTGTCAAACAAGTACC\n+AGTAAAAGATTTTTCAGGAGAACGTGAGCGTTTAGCACGATTAGAAATTCCTTTTGAACTAGTAGTACCAAAAGAAAGAC\n+AAGTGATTTATTGACTATTTAAGAATAAATTAGGAGGAATAACAATGGCAGTGAAAATTGATGGAACGATAAAAAAACGT\n+GTTCAATCTTTAATGGCTTTAAATGGACAGTCTTATGAAGAATGGCTTAATAATCAGCACCAAAAGTATTTAAATGAACA\n+ATCAGAAGTCATTGACCGACTATTGAAAAAAGAATTGGAACGGAAAAAAGGAACAAATGAATAGTTAAAGTAAGTAGAAT\n+AATTTAGGAGGAAATCAACGTGAAAAACAAAATTAAGAAAAAAGTGAAGTATTTTACAGCTGTAATTCAAACGATTATTG\n+GTCTTGGATGGATTGAAGTGAGTACGATGATGCCGGCATTTGCCGATGTTGAACGAACAATTCAAGGCGTTGAAACTGGT\n+TTAGGATCGGAATTTAAAAAGTTTGCTAATCCGGCATTAGGTATAGCAGTCCTCATTTATGGAGGAGCTAGATTTATGGG\n+ACATGATATTGCACAATGGGCAAAAAAATGGGTTTTCGGAGCATTTGTTGGTGCAGCAATTATTGTGAACTTTACTTGGA\n+TTAAAGATACTGTTTGGGGTTGGTTAGGAGGTTGATTCTTAAATGACTGTAGAAGTGGAGATTTTATCGTCTAACGTTGA\n+AGTCTTAGAAAAACAACCACCGTTGGAGTTACTTCCCTTCGCAGATTTTATTGAAATCACAAGATGCATGTATGTTAAGG\n+AGGCAGTAACTTTCCAACTATTGGAAGTTGGTGGAGATCCTTTTTATCGGGGAAGTTTTGAAAAATTAAATGATGAATGG\n+ACACTAGAAAAAGATATACAAAAGAAGTTAAATCAACTAGTCAAAAAAAAGAAAATGACGGCAGAGCAGGCGGAGGGCTT\n+ACTCTACAAAATTCCTTTTAAGAATCTACAGGAGGCTAGTTTTTCGAACGAAAAGAAAACGAGATTCTTCAAAAAAGAGA\n+AGAAGCCCAAAAATACCCAAAAAGTCGGGAGGCTTAAAAGGAAAATACACGTTATTTCTCCAATAAAACTTTCCCAGAAA\n+CAATTGAGAATTTTAGGAGTGTTTGTGATAGGAATACTCTTAATTGTGATTGGTTGGAAATTTATGGCGGGAAGTCAATC\n+GACGGCCAAAACTAGTTTAGAACCTACGTATCAGCAGTTAGTCAATAAAGAAAAGTACGCTGAAATAGTAAAAAAATATC\n+CTGAGAAAGAACCAGAGCTAATTGAGGAGTTATTTCAAAAAGAAGATAAAGCTGGTTTGAAAAAAATAGCTGAACACTCT\n+AATACACAGTTAGCTCAGCTATATCTTGCTTTTTTAGACAAAGATTGGCAGAAAGTAACAGAACTTTCCAAGTTACCACA\n+GGATAGTGATGTTCAAGCAATGGTAGGCTATGCTTTTTTAGAACAAGGTAAGATAGAAGAAGCAAAGCTTATTAATAAAG\n+AAATTCAAAACGATACGCTAACAAAACAAATCAAAAGTAAGGAAATCGAACAGGCGTATAAACTTCTTAGAGAGCGAAAA\n+ATATCTGAAGCGGAGAGAATAAACGAAAGATTGAAGGATAATGGATTATCCGAAGCAATTAAAGTAGCCAAAAGTATTCA\n+TAACTTGTTAGAAAAATACGCCAAAGATAAGGAAAATAAAGAATTATCAGAAAACGAGCGAAAAGAAGCTGCTGATAATT\n+ATCAGCTATGGCTGAAAAATTTGGAACAAATTGGTAAGTCTGTTCATTAATTCGGAGGATAAAATTATGAATGAATTTAC\n+GAATTTCAACTCTTTGTTCCACTGATTACTTTTACGGATTAGATAAAAAAAGAGCGAAAAATGTGATATAATCACCAAGA\n+GTAAATGGAAGTTGAAGACGGTAGCATAAATCCACCGCAAAGGAGCTGGTGCCTATGAGAGTACTCATAGTAAATCAGAA\n+AAACTGGCAAAGGAGTTGTGCAGTTGTGTCTGTATTAGAAGTGTTGGCCTTGCTTACACTATTAATACAAGTCTATAAAT\n+TAGGCAAAAAAGACGACAACAAAAAAGACCGTCGGTAAACTTTAGCAGGTTTCGACGGTCTTTTTTTGATTGTTGAAATA\n+TATGCTGCCGATCTTCTATCGGTCATTTACTCTAAGGGGACATGTTTCGAGCATGTCCTCTTTTCATAATCTATTATACG\n+TATAACGAACGAGAAAGTAAATAAAAAAGCAAAAAAAGGGCTGTTCTAAAAAGAATAGCTCTTTTTTTGTACACAACAAT\n+TGAGAGGGATGAAAGAAATGAACGGAAATCAAAAAGAAACCGCTAAAAAGCAGCATAAATATCTAATTATTGGATTATGT\n+TCAGTTGCGTTACTAGGAAGTGGCTTGACGTATGCCGCACTCAACCAGGGGGAAAAGAAGGAAGCACAGACAGAGCAACA\n+AGGTACAAAACCTAAAGAAGAGCGTCAAACACCAAAAAGTAAACAGTCCCCTTGGGAACGGAAAGTGACGGAGAATGAAG\n+AAAAAAACAAGGATAAAGACAAAAAAATTAAAAGTAAGCAGCCACATAAAACAAAAGATTCGTTAGCAGAAATAGTTAGC\n+GGTTTTGAACGTACAAAAGAAGAAAAACCAAAACTTTTTGGTGTGGAGATACCTGAAATAAAAAGCGATTTATTAGGACA\n+ACTAGCGAATGCTCTTGTTCA'..b'TGAGA\n+ACTACATTTATTATTACAATCATCACCGAATCAAGGAAAAACTTAACTGGAAAAGCCCAGTAGAATTTCGACAATTCAAT\n+CAAAAAACTGCATAAAAATAGAGTGGAAAAATCCACTCTA\n+>NZ_GG692836.1 Enterococcus faecalis T2 genomic scaffold supercont1.4, whole genome shotgun sequence\n+GAAAAGAGTTCTAAATGATAAATACAAACATGCACTAGAGCTAATGGAAACAAACAGCATGCGAGAAGTGGAACGAAAAA\n+CAGGTATTTCTTTGTCTACTCTCAAAAGAATCAAGAAACAAGCAAAGGAAGAACAGTTACTTAATGAGAAATAATTCAGG\n+AGTAGTTATTATGGAAAATAGAGAGAAAATTATTCAGTTGTTGAAGAATCCTTTAGTAACAGGTTATGGGATTGAGATGA\n+TGTCAAATGGGCGACTCTATTCAGCGAACTTTCAAAGATATAGGAATCGGATGAAGAAAGAAGAAAATCCAATGATTATC\n+TTTGATACTATGACTGAAAAAGTTGAAAAGGTATTTTTAGAATTAGCTGAAGAAGTCATACGAACGAACCCTAAAACAAA\n+ACAAGAATTCAAAGATATGATTAAAGAATATAGTTATAAGGAGGATAACAAATGGTAGTTCGAAAAACATATGATCATTG\n+GGGGATCGAAATCAGCACATGGAACAAAAGTAATATAGTTACTTTTATTGATTGTGACTGCGGTCAATTAGCTAAAAGAG\n+AACTAGGAAAGTATAATCAGTATAAATGTGATAGCTGCAATAAAGAATACAAATTGTATCAAGGCAATTATATCGCAATT\n+GATGAAAAAATAAATGAAGTAGCTCAAAACGATTGAAAAAGTAAAAAAGATTTTTGATAGTGTGATAGTGTGCTTTCAAT\n+AATT\n+>NZ_GG692835.1 Enterococcus faecalis T2 genomic scaffold supercont1.3, whole genome shotgun sequence\n+TCAGAATGGTGCATCCCTCAAAACGAGGGAAAATCCCCTAAAACGAGGGATAAAACATCCCTCAAATTGGGGGATTGCTA\n+TCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAGAAAAGATTATTCGTCAGAGAATTCTCATGTTT\n+GACAGCTTATCATCGATAAGCTTTAATGCGGTAGTTTATCACAGTTAAATTGCTAACGCAGTCAGGCACCGTGTATGAAA\n+TCTAACAATGCGCTCATCGTCATCCTCGGCACCGTCACCCTGGATGCTGTAGGCATAGGCTTGGTTATGCCGGTACTGCC\n+GGGCCTCTTGCGGGATATCGTCCATTCCGACAGCATCGCCAGTCACTATGGCGTGCTGCTAGCGCTATATGCGTTGATGC\n+AATTTCTATGCGCACCCGTTCTCGGAGCACTGTCCGACCGCTTTGGCCGCCGCCCAGTCCTGCTCGCTTCGCTACTTGGA\n+GCCACTATCGACTACGCGATCATGGCGACCACACCCGTCCTGTGGATCCTCTACGCCGGACGCATCGTGGCCGGCATCAC\n+CGGCGCCACAGGTGCGGTTGCTGGCGCCTATATCGCCGACATCACCGATGGGGAAGATCGGGCTCGCCACTTCGGGCTCA\n+TGAGCGCTTGTTTCGGCGTGGGTATGGTGGCAGGCCCCGTGG\n+>NZ_GG692834.1 Enterococcus faecalis T2 genomic scaffold supercont1.2, whole genome shotgun sequence\n+AGCCCTTCAATCGCCAGAGAAATCTACGAGATGTATGAAGCGGTTAGTATGCAGCCGTCACTTAGAAGTGAGTATGAGTA\n+CCCTGTTTTTTCTCATGTTCAGGCAGGGATGTTCTCACCTAAGCTTAGAACCTTTACCAAAGGTGATGCGGAGAGATGGG\n+TAAGCACAACCAAAAAAGCCAGTGATTCTGCATTCTGGCTTGAGGTTGAAGGTAATTCCATGACCGCACCAACAGGCTCC\n+AAGCCAAGCTTTCCTGACGGAATGTTAATTCTCGTTGACCCTGAGCAGGCTGTTGAGCCAGGTGATTTCTGCANTAGCCA\n+GACTTGGGGGTGATGAGTTTACCTTCAAGAAACTGATCAGGGATAGCGGTCAGGTGTTTTTACAACCACTAAACCCACAG\n+TACCCAATGATCCCATGCAATGAGAGTTGTTCCGTTGTGGGGAAAGTTATCGCTAGTCAGTGGCCTGAAGAGACGTTTGG\n+CTGATCGGCAAGGTGTTCTGGTCGGCGCATAGCTGATAACAATTGAGCAAGAATCTTCATCGAATTAGGGGAATTTTCAC\n+TCCCCTCAGAACATAACATAGTAAATGGATTGAATTATGAAGAATGGTTTTTATGCGACTTACCGCAGC\n+>NZ_GG692833.1 Enterococcus faecalis T2 genomic scaffold supercont1.1, whole genome shotgun sequence\n+GGGAGCGTCAATAATTTTGTGTAAATAAATTGTCCTCCTGCAAAATAATTAGTTACTCAGTAAACATTGAAACTAATGTA\n+TCGGTTACCTGTTGAAAACCTTTATGGCTTCTGTTTAGAAATTTTTGATTGTATGTATCAAAAATGCTGACTAGAAAGCG\n+TTCTAGTGATTCTTCATTTTGAAACTGCTCTTTTCTACGGCTGTATCTTTTAATTTGCTTATTGAAAGACTCGATTAGAT\n+TGGTTGAGTAAATGGTTCTACGAATGCTAGGTGGAAAATCATAAAAAGTTAATAAGTCTTGGTTTTCTATGAGTGACTGC\n+GTCACTTTAGGATAGTTTTTCTTCCATTTCTCAATCATGCCGGATAAGAAGGTATTCGCTTCTTCTTTTGAGTTAGCTTG\n+ATAAACAGCCTTAAAGTCATCACAGATTTCTTTTCGGTCTTTGACACGTACTTTATGAGCGATATTACGAGATACATGGA\n+TACAACAATGCTGATATTTTGCTTTAGGATAAATTTGATGGATAGTATCTTTCATGCCTTTTAAGCCGTCCGTAATAAAA\n+AGCAAGACTTCTTGAACTCCTCTGGAGTTAATATCCTGTAGCAGCTCATTCCAAACGTATGTTGATTCAGTTGGAGCAAT\n+CGCATAACTCAGTACTTCTTTAGTGCCGTCTTCTCGTATACCAATGGCAATATAAATCGCTTCTTTGGATACGGTTTGAC\n+GTTTTAGTGGAATGTAAGTAGCGTCCATAAAAATAGCGACATACTTATCATTTAAGGCTCTGGATTTAAAGGCATTTACT\n+TCTTCAGTCAGAACTTTAGTCATGTTGGACATGGTTTGTGGAGTATAGTGATGACCGTACATTTTTTCGATCAAATCAGC\n+AATTTCAGACATCGTAACACCTTTTTCGAATAAATGGATAATAGTGGTTTCCAATGTATCGTTTGTTCTTTTGTAGGCTG\n+GTAAAGTTTGTTGTTTAAACTCACCATTACGATCTCTAGGTATTTCCAATGTTAATTCACCATATTCGGTTTTGATTGAT\n+CGAAAGTAAGAACCGTTTCTCGAATTACCTGAATTAAAACCAGTGCGATCATATTTTTCGTAATCTAAAAAAGCCGTTAA\n+TTCAGTCCGTAGGAGTGTGTTTATCGCTTTTTCTAAGTGCGAACGGAATAATTCATTTAAATCGCCTTTAGTGACTAGAG\n+TTTGCACAATTTCTGTAGTAAAATCATTCATAGGGAAGTCCTCTTTTCTGTGAATTGGTTGTCGTTAACTTTATTCTACA\n+GAAGCGACTTCCTTTTTTGTATGGATTTTTTCATTTACACAAAATATTTTACACTCTC\n' |
| b |
| diff -r 7e2debc267eb -r cb2fc9f60381 test-data/Enterococcus_faecalis_TX0104.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Enterococcus_faecalis_TX0104.fa Wed Jan 08 13:01:03 2020 -0500 |
| b |
| b'@@ -0,0 +1,39594 @@\n+>NZ_GG669016.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD95, whole genome shotgun sequence\n+TTCAAGATAAGTTTTAAGTCTGTGTCCTTACACGAGATTTTTTACGCAAAAATAATTCTTTGTAGTTCATCAGCACAAGC\n+ACATTTTTATATAACTGATTAATTTTGTTGAATTATAGTTATATCTATATTGATTAATAGCTGATCTTGCTAAGCATGGA\n+TTTAATAAGAATATTTTTGTTAAAAAATCATATAACCTTACGT\n+>NZ_GG669015.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD94, whole genome shotgun sequence\n+ACAAAGAAAGAGAATAAATAAATGAGATAGGAAGTGTTTCAATTTTTTTGTTACGAGTAATCCAAGAAGAAACAGTTCCT\n+TGAGAGAAAGCATGTAATTCACAAAATTCTTCTACAGTAATCCCTAGATGCTTGATAATGTATGCGTTGATAGGGTGTGG\n+ATATACAAAGGTTTTTCTAGGCATGGTGGGTAAGTTTCCTTTCTT\n+>NZ_GG669014.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD93, whole genome shotgun sequence\n+AATTTTTCTTGGATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCAACTGAGCTAC\n+CGAGCCAAAAACGGTCTGGACGGGACTCGAACCCGCGACCTCCTGCGTGACAGGCAGGCATTCTAACCAGCTGAACTACC\n+AAACCAATTCGTTTTTGCTTTATGCAAATGTATGCTTTAAAAAAT\n+>NZ_GG669013.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD92, whole genome shotgun sequence\n+GGAGGATTACCCAAGTCCGGCTGAAGGGAACGGTCTTGAAAACCGTCAGGCGGGTAAAACCGTGCAAGGGTTCGAATCCC\n+TTATCCTCCTTTCTTAGGAATCAATTTTCCNTGGTCTAATTATCGCGGGGTGGAGCAGTCAGGTAGCTCGTCGGGCTCAT\n+AACCCGAAGGTCGTAGGTTCAAATCCTGCCCCCGCAATTGCTTTT\n+>NZ_GG669012.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD91, whole genome shotgun sequence\n+GGAGTCTGACGAAGCTTATAAGCAGTTTATTGATGAGTATTTTCCATCTTACGACTATGCAAAAGTCAATCGTCTATTGC\n+AATTACGAGCAGACATTTTTTCTACTCTTGCAGGTGAAGCAATCGCAAGCGACGTTAACGGTAAATTTAATAACGACTTA\n+GAAAACATTACAAAACGAATCTACAATTCTAATTCTAATGCGTTGATG\n+>NZ_GG669011.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD90, whole genome shotgun sequence\n+GGAATCAGATGAAGTTTATAAACAATTCATTGATGAATATTTTCCATCCTTTGACTATGCGAAAGTTAATCGCTTGTTAC\n+AATTACGAGCAGACATTTTTTCTACCATTGCAGGTGAAGCAATAGCTAGTGATGTTAACGGTAAATTTAATAACGACTTA\n+GAGAATATCACAAAACGAATCTACAATTCTAATTCTAATGCGTTGATA\n+>NZ_GG669010.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD89, whole genome shotgun sequence\n+GTCGTATTTTTCACGAATAAAGATATCTGCATTTTCGTATTTTTCAGCTTTCCATGGTTCGATATTGCTCGCCCATAATT\n+GCCAACCTTCCTTGGTTTCAACAGGTTCTAACAAACGAAAAGCAACACCGCAAGCACCTTGAAACCGAGCTGTGTCAGAA\n+TCAAGCATGGCAAACCGCATATCATTCACTAACTCTGTCAGCCGTTCGAACTCTTT\n+>NZ_GG669009.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD88, whole genome shotgun sequence\n+CGCCAATGAAACATTAACCGCCGTAGCGAAAAACGCCAGCGGTACAGAAAGTACGCCAACAACGTTCCAAACGCCAGCGG\n+ATGAGACAACCGTAACCGCACCAACAATCACAGGAGTGACAGGTAATTCAACGGCAGGTTACGAGGTTAAAGGAACTACT\n+GATGCCAATGCCACGGTTGAGATCCGAAATGCAGGAGGTGCCGTGATAGGCACAGGGAGCGCC\n+>NZ_GG669008.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD87, whole genome shotgun sequence\n+CAGGATAGTATTTTCAGATGTATTCCCTGGTGTAGAAATAAAATCAGGTGATGGCGCTATGAATTTGTGGAGTTTGAACG\n+GTGGGTACAATAATTATTTAGCGACATCCCCAACAGGAACAGCTACAGGTTTTGGTGCAGACATTATTATCATTGATGAT\n+TTAATTAAAAATGCCGAAGAAGCAAATAATGCTATGGTTTTAGAGAAGCACTGGGATTGGTTTACC\n+>NZ_GG669007.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD86, whole genome shotgun sequence\n+GTATTTTTCATTTGCAACTATCCTTTTATTTTTTATTTGTATCAGTATCAATTTTACAGTAAACATGCATTTATGCCGAG\n+AAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGGAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCA\n+TTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCAAT\n+>NZ_GG669006.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD85, whole genome shotgun sequence\n+ATCAACTTTTCATAGTTCTTCTCAATATACTTACGGTACTTCTCTTGGTCTCGTTTGCTAAAATCTTCTAGCATCTCACT\n+TTGAGTAATACCGTGTAAATCAGCTTGTGCCAATAACTGTCTTTGAATTTTAACTAAAGCACGTTCGAAAACAGATTCTA\n+GTTCACTAAGAGTTTTCTTTTCCAGTTTCAAGCGTGCTTTGTCTTCTAATTCACGACGTTTTTCCCAGTA\n+>NZ_GG669005.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOLD84, whole genome shotgun sequence\n+TGGCAAAAGGTGCCGATTTTATTGGTGGCGTGGATCCTTATTCACTAGATGGTGATTACAAAAAATCATTGGCTGAAACA\n+TTCCGCTTAGCAGATAAACATGGTGTCGGTGTGGATATTCATTTACATGACCGTCATGAAGCTGGGACAACAACGATTAA\n+AGAAATTATTCGTTTAACGAAAGAATATGGTCTACAAGACAAAGTATTTATCAGTCATGCCTTCGGGTTAAA\n+>NZ_GG669004.1 Enterococcus faecalis TX0104 genomic scaffold SCAFFOL'..b'GTGGTATTACCCAAGTTACATTTTGTGTTACTGGAGAAACCCAACTTAAAATCTGTTACTAAATA\n+AGCCACACTAGACATTACAGCAGGACATAACAAAAATGGAATAAATAAAATAGGATTTAATACAGTAGGTAATCCATACA\n+TTACTGGTTCACCAATATTAAACAAAACAGGCATAATTCCAAGTTTTGCAACTTCTTTATAATGACTATTTTTTGATACC\n+CAAAAAATCGCAATTAATAAACCTAAAGTTGCATACCAGACAAACGATCCGTATGATACACTTGTCCAAACATAAGGAAT\n+AGTTTCATTGTTTTGATAAGCTTCTAAATTAACTAAAAGCGCTACTCCAAATACACCTTCCATAATAGGTGCCATAACAT\n+TTCCACCATGAATACCGAAAAACCAGAAAAATTGAACTAAGAAAGCAACTAATATAACAACAAAAAAACTTTGGGAAAGT\n+CCTAACATAGGGCGTTGTAATATTTCGTAAATTACATCTGTTAAAATTTTTCCTGTAATTCTATTTAACAAAAATGTCAA\n+AATAGCAATTATATAAAGAGAAACTAAAGCCGGAATAATTGATAAAAATGGTTTAGCGATAGCTGGAGGAACTGTATCAG\n+GTAATTTAATTGTCCAATTTTTATTCATGAGTTTACAAAAAATAATTGAAGATAAAAAACCTATGATTATTGCGGTAAAA\n+TAACCATTTGAATTAATTTGTGTACCAGGCAACAATCCTGATATAGTCACATTTAAACTGTTACCTGTAACTGTTATTCC\n+CTCAACATCAGTAAATAGTGTTGTTAAGTCAATATTATTATTATTCGATAAATTATAAGTTGAAGTCATAGAATTACTTA\n+TAGAAATAATAAATGAAGACAGGGCGACTAGTCCTGAAGACAAAGTATCTGTTTTATATATTTTAGCAATATTTACTCCT\n+AAACAATAAATAAACAGTAAGGAAACAATAGAAATGCTTCCTTTTGATATCAAATTATTTATATCTACTAACCATTGAAA\n+ATAATCAGTAATCTTCTCATAGCCAAATTGCATAGGAAAATCTACTAAAAAAGCATTTAATAATATTGCAACCGAACCTG\n+TCATTATTACAGGCATCGTACCCATAAATGAATCTCTTAACGCTACTAAAAATCGTTGATTCCCAATCTTAGTAGCTATA\n+GGTAAAACTTTATTCTGGATTGTATTCATTATTTTCTCACTCATTATGATTGACTCCTTCAAAAAATAGTTAGAAAGCGC\n+TATCTAATTATAGTATAGATTTTTTTGACCATTTGAACATGATAATCTATACTTAAAACATGGTATTTTCTTCATAGTTA\n+GTTCTATAAAGGAGGATAATAATGGAGGATTTTTGGTATCATAATAAGTCAGTTTCTGCTCCAATTTCCCTTTCCCAATG\n+CGGATATGAATCTTATCATCCCAATTCTTCTATTCGTAATTATATAGTTCAACAAAAATGGATATTTCATTATGTTTTAT\n+CTGGTAAGGGATTCTTAGAAGTAGAAGCTCAACATTTTGAACTTATAGAACACGATATTTTCTTTTTTTTCAAGGTCAAA\n+AAGTGAAGTATTATACAGATAAAAAGGAACCTTGGACACTGATTTGGTTAGGTATACAAGGTGATAAGACTTCTGAATTT\n+TTGAAAGAAACAACTTTACTAAATACTCATACAGTTAGCTTGACTAAGAATATAAATAAAAAACACACTATTGAAAATAG\n+TATGTGAAAATAGAGAACTAATTGGGGTTTGTCAACTAAACTGTGGAAGTTAAATAGTTAAGAGTTTTTAACCACCATAA\n+TTCTCTCGGCTATTTTGAAATCAGATAAATTTTGATCGGACACATAGTTGAATAAACCTACCGTTGTTACGGAAGGTAAA\n+TCGCATACTTTTCATTCTAGAGGAGAAGGTCTCGTTGATCATTAACTGCTTAAGCACCATAGCCCAGTTTTGAATTCGAC\n+CACCTGACCACTTCGCGTGTAATTCTTTCGTGCGTAAATAAAGTAGTTTTAGGAGTGCATTCTCATTAGAGAACGCTCCT\n+TTTTTTGTGACTTTTCTGAAGCTGGAGTGGACACTTTCAACCGCATTGGTAGTGTACATAATTTTTCGAATGGCACTACC\n+ATAATCAAATAGTTGTTCAACATGTGCAAAGTTCCGTTTCCAGACATCTACAGCACCAGAATAATGAGACCACCGATTTT\n+GAAAACTGCCAAAAGCAGCATGTGCAGCGTTTAGAGAAGAAGCACCGTAGAACTTTTTCATATCTCGGCAGACTTCCTTA\n+TAGTCCTTACTTGGAATATAGCGCAATGCATTTCGAACAAGATGAACAATACAGCGCTGAACAATTACCGATGGAAAGAT\n+CGCTTTTGCGCCTTCTTCGAGGCCAGAAACACCGTCCATCGAAATGAAAAAGACATCTTCGACACCACGTGCTTTCAGTT\n+CATCAAATACTTGCATCCAGCGATTTTTAGATTCTGTTTGATTTAACCATAATCCTAAAATCTCCTTATTTCCTTTGAGA\n+TCATAGCCAAGAATGGTGTATACAGCATATTCTTTGGCTTCATAATTTTCTCGTAAAGTAACATACATACAATCAACGAA\n+TAGAAAGGCATAACACTTTGCTAGGGGGCGGGCTTGCCATTCTTCCAATTCAGGAAGGACAGCGTCAGTGATATCTGAAA\n+TCATTTCATGGGAAATATCAAAGCCATAGATAGCTTCGACGGTTGCGGCAATATCTCGTTGACTCATTCCTCGTGCATAC\n+ATGGAAAGAACCTTCCCTTCGATGTCGGAGACATCTCGTTTTCTCTTAGGAATTAACTCTGGTTCAAAGGAAGCTTCCCG\n+GTCTCTAGGAACATCAATAGCTACTTCACCAAAACTGGTTTTAAGCGTTTTAGTTCCATAGCCATTTCGACGGTTATCGT\n+GTTCCTTAGGCTCTTTAGAATGGGCATCATAACCTAAATGATTATTCAATTCTCCTTGAAGCATTTTTTCAAAAAGGGGC\n+CCAAACACATCTTTCAAAGCATCTTGCATGTCATCGACAGATTCAGGTTGATAGGCATTCAGAATGGATTCAGCTAACTT\n+TTCGGCATCAGGATTTCTTTTCTTTCTAGCCATCGTGTAATCACCTCTTGATCTTATTGTAGAAAAAGAAAAACCGCGAA\n+GCAACCACCTGCCTAGGATTAATGGTTACTTACACGGTTTACATTACACTCTCATCATTAAAAAATATCTTTCGATATTA\n+CTAAAAAATGAAATTATCTATTTGAAATTTAAATCTGATAATATATTGAGTGTTCCAATGAGGGCTTTGATCCTATTATC\n+CATATCTTTTTCAGTTTTAATATTGATACACATTATAAGAAAAAGAAACTTTTGGTTAATTTATTTCATCCCAGTGCAAA\n+ATATAAAAAAGTAAAATAGACCATAGGCAATAGATTAACAATTAATATAATACAAGCAAATATTCTATTCATTGTATTTC\n+TGCTTTCAAAAAGTTCTAATATTGAAAGTATAATTCCACAAATGCCTATAATAAGTATGGGAATAAGATTAGAAAATAAC\n+ACCCCGAGCCAATCTGTGAAAATTACTATATTTACTAATATCCCTATTAACATACCTATCATATTTATTAAATCAATTTT\n+TTTCATTAGATATTTCTCCTTTATTAAATCTGAAGTACTTATATTAAAATAATTCTAAACTATTTACCTCAAAAAGTGCA\n+ATAAATTATTTCTGAACAATAAAATGATAGTCAAAACAAAAAAATATTGTTAATCGTTCAGAGCCATCCACCATTTTTAC\n+AATTAATGTATTCATATAAACTATTTACGATACTATAATAAAAGCATTATAGTTATTTATAAATAATTAAAGCAACT\n' |