| Previous changeset 9:276f5d8712d5 (2021-11-23) Next changeset 11:291923e6f276 (2024-03-18) |
|
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit c15c09d6f7f59753d2980da774ffeced15836193 |
|
modified:
flye.xml macros.xml |
| b |
| diff -r 276f5d8712d5 -r cb8dfd28c16f flye.xml --- a/flye.xml Tue Nov 23 08:35:32 2021 +0000 +++ b/flye.xml Wed Oct 26 13:37:35 2022 +0000 |
| [ |
| @@ -39,6 +39,7 @@ #end if $meta $scaffold + $no_alt_contigs ]]></command> <inputs> <param name="inputs" type="data" format="fasta,fasta.gz,fastq,fastq.gz,fastqsanger.gz,fastqsanger" multiple="true" label="Input reads" /> @@ -97,6 +98,7 @@ </when> <when value="false" /> </conditional> + <param argument="--no-alt-contigs" type="boolean" truevalue="--no-alt-contigs" falsevalue="" checked="false" label="Remove all non-primary contigs from the assembly"/> <param name="generate_log" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Generate a log file"/> </inputs> <outputs> @@ -321,6 +323,33 @@ </assert_contents> </output> </test> + <!--Test 09: test not-alt-contigs parameter w--> + <test expect_num_outputs="4"> + <param name="inputs" ftype="fasta.gz" value="nanopore.fasta.gz"/> + <param name="mode" value="--nano-raw"/> + <param name="iterations" value="0"/> + <param name="no_alt_contigs" value="true"/> + <output name="assembly_info" ftype="tabular"> + <assert_contents> + <has_size value="151" delta="100"/> + </assert_contents> + </output> + <output name="assembly_graph" ftype="graph_dot"> + <assert_contents> + <has_size value="217" delta="100"/> + </assert_contents> + </output> + <output name="assembly_gfa" ftype="txt"> + <assert_contents> + <has_size value="5110" delta="100"/> + </assert_contents> + </output> + <output name="consensus" ftype="fasta"> + <assert_contents> + <has_size value="5123" delta="100"/> + </assert_contents> + </output> + </test> </tests> <help><![CDATA[ |
| b |
| diff -r 276f5d8712d5 -r cb8dfd28c16f macros.xml --- a/macros.xml Tue Nov 23 08:35:32 2021 +0000 +++ b/macros.xml Wed Oct 26 13:37:35 2022 +0000 |
| b |
| @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">2.9</token> + <token name="@TOOL_VERSION@">2.9.1</token> <token name="@SUFFIX_VERSION@">0</token> <xml name="requirements"> <requirements> |