| Previous changeset 13:25809f699cb3 (2016-08-11) Next changeset 15:2a45cd656e8e (2016-09-02) |
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Commit message:
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 38f01a73fea83321618501978a3a505b5e8ab527 |
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modified:
hubArchiveCreator.xml tool_dependencies.xml |
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| diff -r 25809f699cb3 -r cbd8982c9f51 hubArchiveCreator.xml --- a/hubArchiveCreator.xml Thu Aug 11 19:02:29 2016 -0400 +++ b/hubArchiveCreator.xml Mon Aug 15 19:19:32 2016 -0400 |
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| @@ -9,6 +9,7 @@ <requirement type="package" version="0.0.1">gff3ToGenePred</requirement> <requirement type="package" version="0.0.1">gtfToGenePred</requirement> <requirement type="package" version="0.0.1">genePredToBed</requirement> + <requirement type="package" version="0.0.1">genePredToBigGenePred</requirement> <requirement type="package" version="1.2">samtools</requirement> <!-- Conda dependencies --> <requirement type="package" version="332">ucsc-bedtobigbed</requirement> |
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| diff -r 25809f699cb3 -r cbd8982c9f51 tool_dependencies.xml --- a/tool_dependencies.xml Thu Aug 11 19:02:29 2016 -0400 +++ b/tool_dependencies.xml Mon Aug 15 19:19:32 2016 -0400 |
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| @@ -8,6 +8,7 @@ - gff3ToGenePred - gtfToGenePred - genePredToBed + - genePredToBigGenePred - faToTwoBit - samtools --> @@ -79,4 +80,29 @@ </install> <readme>The tools downloaded by this dependency definition are free for academic use.</readme> </package> + + http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/genePredToBigGenePred + + <!-- Package genePredToBigGenePred --> + <package name="genePredToBigGenePred" version="0.0.1"> + <install version="1.0"> + <actions> + <action target_directory="bin" type="download_binary"> + <url_template os="darwin"> + http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/genePredToBigGenePred + </url_template> + <url_template os="linux"> + http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/genePredToBigGenePred + </url_template> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/bin/genePredToBigGenePred</file> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme>The tools downloaded by this dependency definition are free for academic use.</readme> + </package> </tool_dependency> |