| Next changeset 1:5f78108125fd (2015-07-17) |
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Commit message:
Imported from capsule None |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r cc0bd4986b48 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri May 22 04:54:43 2015 -0400 |
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| @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="augustus" version="3.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.1.tar.gz</action> + <action type="shell_command">make</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>scripts</source_directory> + <destination_directory>$INSTALL_DIR/scripts</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>config</source_directory> + <destination_directory>$INSTALL_DIR/config</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable> + </action> + </actions> + </install> + <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. +It can be used as an ab initio program, which means it bases its prediction purely on the +sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources +such as EST, MS/MS, protein alignments and synthenic genomic alignments. +http://augustus.gobics.de/binaries/README.TXT</readme> + </package> +</tool_dependency> |