| Previous changeset 30:ceced09589d9 (2017-04-13) Next changeset 32:be1ca0e7829b (2017-04-13) |
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GRsetFromGEO/GRsetFromGEO.xml GRsetFromGEO/tool_dependencies.xml |
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| diff -r ceced09589d9 -r cc4b808cb2ea GRsetFromGEO/GRsetFromGEO.xml --- a/GRsetFromGEO/GRsetFromGEO.xml Thu Apr 13 12:06:07 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.xml Thu Apr 13 12:19:33 2017 -0400 |
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| @@ -1,6 +1,6 @@ <tool id="GRset" name="GRsetFromGEO" version="1.16.2"> <requirements> - <requirement type="R-module" version="1.15.7">minfi</requirement> + <requirement name="package_r_3_2_1" type="package" version="3.2.1">R</requirement> </requirements> <stdio> <exit_code range="1:" /> @@ -10,7 +10,7 @@ <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> </inputs> <outputs> - <data ftype="RData" name="output" label="GenomicRatioSet.RData"/> + <data type="galaxy.datatypes.binary:RData" name="output" label="GenomicRatioSet.RData"/> </outputs> <tests> <test> @@ -21,13 +21,13 @@ </collection> </element> </param> - <output ftype="RData" name="output" label="test-data/GenomicRatioSet.RData"/> + <output type="galaxy.datatypes.binary:RData" name="output" label="test-data/GenomicRatioSet.RData"/> </test> </tests> <help> -Reading Illumina methylation array data from GEO +Reading Illumina methylation array data from GEO. </help> <citations> -xxx +Aryee, Martin J., et al. "Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays." Bioinformatics 30.10 (2014): 1363-1369. </citations> </tool> |
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| diff -r ceced09589d9 -r cc4b808cb2ea GRsetFromGEO/tool_dependencies.xml --- a/GRsetFromGEO/tool_dependencies.xml Thu Apr 13 12:06:07 2017 -0400 +++ b/GRsetFromGEO/tool_dependencies.xml Thu Apr 13 12:19:33 2017 -0400 |
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| @@ -1,6 +1,5 @@ -<?xml version="1.0"?> +<?xml version='1.0' encoding='utf-8' ?> <tool_dependency> - <install version="1.0"> <actions> <action type="setup_r_environment"> <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> @@ -272,5 +271,4 @@ </package> </action> </actions> - </install> - </tool_dependency> + </tool_dependency> \ No newline at end of file |