| Previous changeset 6:e44443b071da (2018-04-12) Next changeset 8:b1c2fe7df3f3 (2018-05-22) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee |
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modified:
main_macros.xml |
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added:
test-data/mv_result01.tabular test-data/mv_result02.tabular test-data/mv_result03.tabular test-data/mv_result04.tabular test-data/mv_result05.tabular test-data/mv_result06.tabular test-data/regression_metrics_result01 test-data/regression_metrics_result02 test-data/regression_metrics_result03 test-data/regression_metrics_result04 test-data/regression_metrics_result05 test-data/regression_metrics_result06 test-data/regression_test_y.tabular |
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| diff -r e44443b071da -r cdb7948427aa main_macros.xml --- a/main_macros.xml Thu Apr 12 08:24:24 2018 -0400 +++ b/main_macros.xml Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -423,8 +423,10 @@ <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False"> <param name="infile1" type="data" format="tabular" label="@LABEL1@"/> + <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> <param name="col1" multiple="@MULTIPLE1@" type="data_column" data_ref="infile1" label="Select the target column:"/> <param name="infile2" type="data" format="tabular" label="@LABEL2@"/> + <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> </xml> @@ -835,6 +837,21 @@ </conditional> </xml> + <xml name="model_validation_common_options"> + <param argument="cv" type="integer" value="" optional="true" label="cv" help="The number of folds in a (Stratified)KFold" /> + <expand macro="n_jobs"/> + <expand macro="verbose"/> + <yield/> + </xml> + + <xml name="scoring"> + <param argument="scoring" type="text" value="" optional="true" label="scoring" help="A metric used to evaluate the estimator"/> + </xml> + + <xml name="pre_dispatch"> + <param argument="pre_dispatch" type="text" value="all" optional="true" label="pre_dispatch" help="Number of predispatched jobs for parallel execution"/> + </xml> + <!-- Outputs --> <xml name="output"> |
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| diff -r e44443b071da -r cdb7948427aa test-data/mv_result01.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mv_result01.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,3 @@ +0.9452947345848994 +0.9926363525448115 +-0.4384003222944141 |
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| diff -r e44443b071da -r cdb7948427aa test-data/mv_result02.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mv_result02.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,10 @@ +1.6957921248350636 +-0.9248588846061156 +-0.48640795813792376 +0.647707440306449 +0.32740690920811427 +-0.8229559569886034 +1.2150108977866847 +0.14723254190255275 +0.6053186541119763 +0.3972102859168325 |
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| diff -r e44443b071da -r cdb7948427aa test-data/mv_result03.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mv_result03.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,3 @@ +0.9452947345848994 +0.9926363525448115 +-0.4384003222944141 |
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| diff -r e44443b071da -r cdb7948427aa test-data/mv_result04.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mv_result04.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,5 @@ +17 +56 +95 +134 +174 |
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| diff -r e44443b071da -r cdb7948427aa test-data/mv_result05.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mv_result05.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,1 @@ +0.4998435882784322 |
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| diff -r e44443b071da -r cdb7948427aa test-data/mv_result06.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mv_result06.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,5 @@ +0.07547169811320754 0.10344827586206896 0.10294117647058823 +0.07547169811320754 0.10344827586206896 0.10294117647058823 +0.07547169811320754 0.10344827586206896 0.10294117647058823 +0.07547169811320754 0.10344827586206896 0.10294117647058823 +0.07547169811320754 0.10344827586206896 0.10294117647058823 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_metrics_result01 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_metrics_result01 Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,2 @@ +explained_variance_score : +0.8260 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_metrics_result02 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_metrics_result02 Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,2 @@ +mean_absolute_error : +3.8706 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_metrics_result03 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_metrics_result03 Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,2 @@ +mean_squared_error : +26.0153 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_metrics_result04 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_metrics_result04 Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,2 @@ +mean_squared_log_error : +0.0061 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_metrics_result05 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_metrics_result05 Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,2 @@ +median_absolute_error : +3.0090 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_metrics_result06 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_metrics_result06 Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,2 @@ +r2_score : +0.8129 |
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| diff -r e44443b071da -r cdb7948427aa test-data/regression_test_y.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_test_y.tabular Sat Apr 28 18:09:56 2018 -0400 |
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| @@ -0,0 +1,88 @@ +actual prediction +66 69.857 +61 61.319 +52 51.891 +66 61.321 +70 66.463 +82 70.162 +85 78.848 +84 75.786 +65 62.121 +92 74.078 +61 63.647 +85 72.176 +44 38.458 +65 62.433 +69 71.594 +62 56.013 +64 60.943 +56 56.995 +53 56.748 +79 76.113 +63 63.758 +57 54.401 +67 66.493 +62 62.465 +59 58.786 +56 53.032 +65 66.769 +52 46.448 +66 62.122 +76 80.176 +64 73.833 +61 64.313 +48 55.188 +81 81.972 +77 74.178 +57 61.695 +58 53.636 +47 51.424 +68 68.929 +51 42.452 +77 70.385 +56 57.373 +73 76.172 +51 42.396 +59 61.098 +87 74.08 +58 52.745 +81 81.381 +58 53.324 +42 42.471 +49 46.507 +40 42.106 +65 64.17 +64 65.703 +70 74.13 +65 61.339 +53 55.177 +57 59.945 +53 54.651 +60 59.664 +67 65.474 +49 50.061 +53 60.849 +69 70.188 +55 60.062 +68 59.236 +76 71.868 +69 69.796 +78 76.83 +36 41.32 +74 76.868 +57 56.783 +69 60.378 +50 50.468 +56 54.426 +67 63.991 +48 43.711 +80 74.354 +48 47.306 +49 52.326 +57 53.526 +77 68.21 +81 73.607 +67 72.658 +66 63.243 +57 57.126 +45 46.04 |