| Previous changeset 3:2ecf5a570907 (2021-01-15) Next changeset 5:3ca2d2a9068c (2021-09-16) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaspades commit 52c73f875aef9c4692b886e1a50d8124875e7dcb" |
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modified:
metaspades.xml |
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added:
test-data/ecoli_1K_1.fq.gz test-data/ecoli_1K_2.fq.gz |
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| diff -r 2ecf5a570907 -r ce02f513e598 metaspades.xml --- a/metaspades.xml Fri Jan 15 12:28:26 2021 +0000 +++ b/metaspades.xml Fri Mar 19 21:38:05 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="metaspades" name="metaSPAdes" version="3.9.0"> +<tool id="metaspades" name="metaSPAdes" version="3.9.0.1"> <description>assembler for metagenomics datasets</description> <requirements> <requirement type="package" version="3.9.0">spades</requirement> @@ -62,14 +62,14 @@ <option value="paired-collection">Paired List Collection</option> </param> <when value="separate"> - <param name="fwd_reads" type="data" format="fastq" label="Forward reads" help="FASTQ format" /> - <param name="rev_reads" type="data" format="fastq" label="Reverse reads" help="FASTQ format" /> + <param name="fwd_reads" type="data" format="fastq,fastq.gz" label="Forward reads" help="FASTQ format" /> + <param name="rev_reads" type="data" format="fastq,fastq.gz" label="Reverse reads" help="FASTQ format" /> </when> <when value="interleaved"> - <param name="interleaved_reads" type="data" format="fastq" label="Interleaved paired reads" help="FASTQ format" /> + <param name="interleaved_reads" type="data" format="fastq,fastq.gz" label="Interleaved paired reads" help="FASTQ format" /> </when> <when value="paired-collection"> - <param name="fastq_collection" type="data_collection" label="Paired-end reads collection" format="fastq" collection_type="paired" help="FASTQ format" /> + <param name="fastq_collection" type="data_collection" label="Paired-end reads collection" format="fastq,fastq.gz" collection_type="paired" help="FASTQ format" /> </when> </conditional> </repeat> @@ -90,6 +90,15 @@ <param name="rev_reads" value="ecoli_1K_2.fq" ftype="fastq" /> <output name="out_contigs" file="reference_1K.fa" ftype="fasta" compare="re_match" lines_diff="1" /> </test> + <test> + <param name="sc" value="false" /> + <param name="careful" value="false" /> + <param name="kmers" value="33,55" /> + <param name="lib_type" value="paired_end" /> + <param name="fwd_reads" value="ecoli_1K_1.fq.gz" ftype="fastq.gz" /> + <param name="rev_reads" value="ecoli_1K_2.fq.gz" ftype="fastq.gz" /> + <output name="out_contigs" file="reference_1K.fa" ftype="fasta" compare="re_match" lines_diff="1" /> + </test> </tests> <help> <![CDATA[ |
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| diff -r 2ecf5a570907 -r ce02f513e598 test-data/ecoli_1K_1.fq.gz |
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| Binary file test-data/ecoli_1K_1.fq.gz has changed |
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| diff -r 2ecf5a570907 -r ce02f513e598 test-data/ecoli_1K_2.fq.gz |
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| Binary file test-data/ecoli_1K_2.fq.gz has changed |