Repository 'marea'
hg clone https://toolshed.g2.bx.psu.edu/repos/bimib/marea

Changeset 62:ce8534417470 (2020-03-15)
Previous changeset 61:69dfed656e0b (2020-03-15) Next changeset 63:b8cbc2122d55 (2020-03-16)
Commit message:
Uploaded
modified:
Marea/marea.xml
b
diff -r 69dfed656e0b -r ce8534417470 Marea/marea.xml
--- a/Marea/marea.xml Sun Mar 15 12:26:26 2020 -0400
+++ b/Marea/marea.xml Sun Mar 15 12:26:38 2020 -0400
b
@@ -1,4 +1,4 @@
-<tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.3">
+<tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.4">
  <macros>
  <import>marea_macros.xml</import>
  </macros>
@@ -28,11 +28,12 @@
                 ${data.input_name}
             #end for
             --comparison ${cond.comparis.comparison}
-            #if $cond.advanced.cond_map.cond_map_choice == 'true':
-             --custom_rules true
-             --custom_map ${cond.advanced.cond_map.custom_map}
-            #end if
+
             #if $cond.advanced.choice == 'true':
+ #if $cond.advanced.cond_map.cond_map_choice == 'true':
+ --custom_rules true
+ --custom_map ${cond.advanced.cond_map.custom_map}
+ #end if
               --pValue ${cond.advanced.pValue}
               --fChange ${cond.advanced.fChange}
             --generate_svg ${cond.advanced.generateSvg}
@@ -51,11 +52,11 @@
             #if $cond.comparis.comparison == 'onevsmany'
              --control ${cond.comparis.controlgroup}
             #end if
-            #if $cond.advanced.cond_map.cond_map_choice == 'true':
-             --custom_rules true
-             --custom_map ${cond.advanced.cond_map.custom_map}
-            #end if
             #if $cond.advanced.choice == 'true':
+ #if $cond.advanced.cond_map.cond_map_choice == 'true':
+ --custom_rules true
+ --custom_map ${cond.advanced.cond_map.custom_map}
+ #end if
                --pValue ${cond.advanced.pValue}
                --fChange ${cond.advanced.fChange}
              --generate_svg ${cond.advanced.generateSvg}