| Previous changeset 4:7b4468117008 (2018-08-22) Next changeset 6:64e9a6afdd0c (2023-08-10) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_filter commit 4c002e52261da2e7609735883d91fa1610ce6ce7" |
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modified:
fastq_quality_filter.xml macros.xml |
| b |
| diff -r 7b4468117008 -r ce9cd02d5b88 fastq_quality_filter.xml --- a/fastq_quality_filter.xml Wed Aug 22 11:04:33 2018 -0400 +++ b/fastq_quality_filter.xml Thu Jan 30 13:29:21 2020 -0500 |
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| @@ -1,17 +1,18 @@ -<tool id="cshl_fastq_quality_filter" version="1.0.2" name="Filter by quality"> +<tool id="cshl_fastq_quality_filter" version="1.0.2+galaxy0" name="Filter by quality"> <description></description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements" /> + <expand macro="requirements"> + <requirement type="package" version="1.0.8">bzip2</requirement> + </expand> <command detect_errors="exit_code"><![CDATA[ @CATS@ fastq_quality_filter -q $quality -p $percent -v --o '$output' @FQQUAL@ -@GZIP@ +@GZIP@ > '$output' ]]></command> <inputs> |
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| diff -r 7b4468117008 -r ce9cd02d5b88 macros.xml --- a/macros.xml Wed Aug 22 11:04:33 2018 -0400 +++ b/macros.xml Thu Jan 30 13:29:21 2020 -0500 |
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| @@ -21,7 +21,9 @@ <token name="@GZIP@"> <![CDATA[ #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - -z + | gzip -c + #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): + | bzip2 -c #end if ]]> </token> |