| Previous changeset 0:5d6f8f0bef7c (2017-03-04) Next changeset 2:97e3b735ed22 (2024-02-09) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2/ commit b5bd1ab6e4f3a14819dbc2bdad33006bc6131b3c" |
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modified:
graphlan_annotate.xml graphlan_macros.xml test-data/intermediary_tree |
| b |
| diff -r 5d6f8f0bef7c -r cf1df6b2220a graphlan_annotate.xml --- a/graphlan_annotate.xml Sat Mar 04 10:27:20 2017 -0500 +++ b/graphlan_annotate.xml Fri Jan 24 16:25:56 2020 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="graphlan_annotate" name="Generation, personalization and annotation of tree" version="@WRAPPER_VERSION@.0"> +<tool id="graphlan_annotate" name="Generation, personalization and annotation of tree" version="@WRAPPER_VERSION@"> <description>for GraPhlAn</description> <macros> <import>graphlan_macros.xml</import> @@ -48,4 +48,4 @@ ]]></help> <expand macro="citations"/> -</tool> \ No newline at end of file +</tool> |
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| diff -r 5d6f8f0bef7c -r cf1df6b2220a graphlan_macros.xml --- a/graphlan_macros.xml Sat Mar 04 10:27:20 2017 -0500 +++ b/graphlan_macros.xml Fri Jan 24 16:25:56 2020 -0500 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@WRAPPER_VERSION@">1.0.0</token> + <token name="@WRAPPER_VERSION@">1.1.3</token> <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">graphlan</requirement> @@ -11,4 +11,4 @@ <citation type="doi">10.7717/peerj.1029</citation> </citations> </xml> -</macros> \ No newline at end of file +</macros> |
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| diff -r 5d6f8f0bef7c -r cf1df6b2220a test-data/intermediary_tree --- a/test-data/intermediary_tree Sat Mar 04 10:27:20 2017 -0500 +++ b/test-data/intermediary_tree Fri Jan 24 16:25:56 2020 -0500 |
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| b'@@ -46,6 +46,41 @@\n <branch_length>1.0</branch_length>\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">200.0</property>\n <clade>\n+ <name>p__Actinobacteria</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ <clade>\n+ <name>c__Actinobacteria</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ <clade>\n+ <name>o__Actinomycetales</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ <clade>\n+ <name>f__Propionibacteriaceae</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ <clade>\n+ <name>g__Propionibacterium</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ <clade>\n+ <name>s__Propionibacterium_acnes</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ <clade>\n+ <name>t__Propionibacterium_acnes_unclassified</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.66961905</property>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ <clade>\n <name>p__Deinococcus_Thermus</name>\n <branch_length>1.0</branch_length>\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.298886707</property>\n@@ -66,11 +101,6 @@\n <branch_length>1.0</branch_length>\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">22.298886707</property>\n <clade>\n- <name>s__Deinococcus_unclassified</name>\n- <branch_length>1.0</branch_length>\n- <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">21.1817307606</property>\n- </clade>\n- <clade>\n <name>s__Deinococcus_radiodurans</name>\n <branch_length>1.0</branch_length>\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">21.1340492974</property>\n@@ -80,6 +110,11 @@\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">21.1340492974</property>\n </clade>\n </clade>\n+ <clade>\n+ <name>s__Deinococcus_unclassified</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">21.1817307606</property>\n+ </clade>\n </clade>\n </clade>\n </clade>\n@@ -91,36 +126,6 @@\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">183.285013514</property>\n <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_color" ref="A'..b' <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">49.960616022</property>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ <clade>\n+ <name>o__Pseudomonadales</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">34.0879564025</property>\n+ <clade>\n+ <name>f__Moraxellaceae</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">20.9013800671</property>\n+ <clade>\n+ <name>g__Acinetobacter</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">20.9013800671</property>\n+ <clade>\n+ <name>s__Acinetobacter_baumannii</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">20.9013800671</property>\n+ <clade>\n+ <name>t__Acinetobacter_baumannii_unclassified</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">20.9013800671</property>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ <clade>\n+ <name>f__Pseudomonadaceae</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">33.3271759768</property>\n+ <clade>\n+ <name>g__Pseudomonas</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">33.3271759768</property>\n+ <clade>\n+ <name>s__Pseudomonas_aeruginosa</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">25.8720239085</property>\n+ <clade>\n+ <name>t__Pseudomonas_aeruginosa_unclassified</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">25.8720239085</property>\n+ </clade>\n+ </clade>\n+ <clade>\n+ <name>s__Pseudomonas_unclassified</name>\n+ <branch_length>1.0</branch_length>\n+ <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">28.0078913105</property>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n+ </clade>\n </clade>\n </clade>\n </clade>\n@@ -434,6 +434,7 @@\n <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_color" ref="A:1">#2d19ff_._._#29cc36</property>\n <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_edge_width" ref="A:1">._._._.</property>\n <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_size" ref="A:1">40_._._40</property>\n+ <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_shape" ref="A:1">._._._.</property>\n <property applies_to="phylogeny" datatype="xsd:string" id_ref="ignore_branch_len" ref="A:1">1</property>\n </phylogeny>\n </phyloxml>\n\\ No newline at end of file\n' |