| Previous changeset 4:8cad169bde4c (2018-01-02) Next changeset 6:8926550196ce (2018-03-07) |
|
Commit message:
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit d76f2040a05a5f8752cbfe9a8bc1ef9efae45c01 |
|
modified:
hicMergeMatrixBins.xml |
| b |
| diff -r 8cad169bde4c -r d04398893232 hicMergeMatrixBins.xml --- a/hicMergeMatrixBins.xml Tue Jan 02 10:15:37 2018 -0500 +++ b/hicMergeMatrixBins.xml Wed Jan 03 13:29:09 2018 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="hicexplorer_hicmergematrixbins" name="@BINARY@" version="@WRAPPER_VERSION@.0"> +<tool id="hicexplorer_hicmergematrixbins" name="@BINARY@" version="@WRAPPER_VERSION@.1"> <description>Merges bins from a Hi-C matrix</description> <macros> <token name="@BINARY@">hicMergeMatrixBins</token> @@ -10,7 +10,8 @@ --matrix '$matrix_h5_cooler' --numBins $numBins $runningWindow - --outFileName ./out.npz.h5 + --outFileName matrix.$outputFormat + && mv matrix.$outputFormat matrix ]]> </command> @@ -19,9 +20,17 @@ <param argument="--numBins" type="integer" min="1" value="3" label="Number of bins to merge" /> <param argument="--runningWindow" type="boolean" falsevalue="" truevalue="--runningWindow" label="Merge using a running window of length --numBins" /> + <param name='outputFormat' type='select' label="Output file format"> + <option value='h5' selected='true'>HiCExplorer format</option> + <option value="cool">cool</option> + </param> </inputs> <outputs> - <data name="outFileName" from_work_dir="out.npz.h5" format="h5"/> + <data name="outFileName" from_work_dir="matrix" format="h5"> + <change_format> + <when input="outputFormat" value="cool" format="cool" /> + </change_format> + </data> </outputs> <tests> <test> |