| Previous changeset 3:b4c9c085d709 (2019-02-05) Next changeset 5:5b7aa9f6fd59 (2022-12-22) |
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Commit message:
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blastparser_and_hits commit d4b806c1a39ded32ac3aa0d929c5022cca936bd6" |
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modified:
BlastParser_and_hits.xml test-data/al_sequences.fa test-data/output.fa test-data/output.tab test-data/un_sequences.fa |
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| diff -r b4c9c085d709 -r d04fc71fb1b3 BlastParser_and_hits.xml --- a/BlastParser_and_hits.xml Tue Feb 05 17:21:41 2019 -0500 +++ b/BlastParser_and_hits.xml Wed Mar 10 16:32:18 2021 +0000 |
| [ |
| @@ -1,6 +1,8 @@ -<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.6.1"> +<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.7.0"> <description>for virus discovery</description> -<requirements></requirements> +<requirements> + <requirement type="package" version="3.7.6">python</requirement> +</requirements> <command><![CDATA[ python '$__tool_directory__'/BlastParser_and_hits.py --sequences '$sequences' |
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| diff -r b4c9c085d709 -r d04fc71fb1b3 test-data/al_sequences.fa --- a/test-data/al_sequences.fa Tue Feb 05 17:21:41 2019 -0500 +++ b/test-data/al_sequences.fa Wed Mar 10 16:32:18 2021 +0000 |
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| b'@@ -1,62 +1,128 @@\n->Locus_81_Transcript_1/1_Confidence_1.000_Length_155\n-GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGATTAGCGCGA\n-GTTTGCTTGGCATCGTTAAGCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCG\n-TCTTAATCTTCTCCCAGCATGATCCGTGTAACTCG\n->Locus_10_Transcript_6/8_Confidence_0.333_Length_1121\n-CGTTATCCAGCTGGATTATGTTGTTATTGTGTAGAAAATATAGGAGTCTCGAAGACTCTT\n-TAGAAAGCATACATGTAGTTGCCTCCCTCGTTCTGGATGTACTGAACGGCCTGCTTGCAT\n-ACTGATGTTAAGTGCAGAGCTATGTTTTCTCTTCCTCGCCAAAAAGAAAAACCACTTTTG\n-ACGACTATCTTACTTATCCAGGGTGTTAGTATTGGATTCAATATCCCTGTTGGTTCAAGA\n-GGGACTTTACCTGTTGCAATGTTAATTGCATCAGTCCTATGCCATCCTTTCCTTTCATAT\n-TCCGTCATAGTTTTGTAAGCTTCAGGATACCATTTGGCCAAACATTCTTTTAGACTAGGT\n-ATCTCAATCTTAGCTTTCTTCGCGATTTGATGTTGTCTTATAAATTCGCTGAATATTGGC\n-ATTCCGTTTGGACCAGCCTCATGAGATTGAATCATACGTCTAGGCCAAATGTTATTTTCG\n-CACGTTGGTCCTTCTGTTTTGTAAAACCTGTATGTGGGTACAACCGTCTTCTCCCATACC\n-GGTTTCAACTTCCTTAAATTTTTGATATAATTGCTGGAAATGTGTTTTTGCGGTCCAGGA\n-ATGTCGTCGGCTGCTATTTTCATTGAAAATTCGACTTGTTGATAAGCCGTCTTTTCCTCA\n-TCTGTCATTTGCTTCCACGTCAAGTTGATGTTTTCACTAAACAGTCCAGGAACATCGAAC\n-GTTGGGATGTCAGCAAGTGGTAGCTTGCTAGTAGTTTTCCACCCTTTCCATTCGTATATT\n-CCGAAACCACCCAGTCGTTTAGGCAGGTGCAGCCAGTGATAGCTCTGTCCCGTGTATTTA\n-CTCCACTTAATTTTGTTTGCTTGATGTAACCAATCCAATTGTTTCTTGCTTCTCCTTTCT\n-AATAAATAGATATTATTAGCGGTTGTCTCAACTTGTTGATTTGCAGTCCATGGTTGTGGG\n-TTCCACGGTTTCCTTTGTGTCACGCTAGGGATAGCCCGATTTGTCCAGCCTCTGACGCCT\n-TGAGTAGATATTTCTGTCCTTAAGAATTCGCAACAATTTTGCATAATTCCAAACTTGCTG\n-TTTTCTCCAACGGCGTTGATTGCCTGATAGCTATACCTAAA\n->Locus_20_Transcript_1/1_Confidence_0.000_Length_191\n-CCCCCCCCACCTTCGCAATCACAGACAAATTAAACGTAAAACAAACGACATGGATGCATC\n-CAACCCTATTATTTCAAGCGATAGGAGCACTGTGAATCAGGTTTATGCGAAGATGGTGAG\n-GAGAAAACGGCAAGATCTTGCCTATCTCCAGGAGTTGGTGAGGACAGCCCATCGAGAGAT\n-TCTCCCCCAAG\n+>Locus_1_Transcript_1/7_Confidence_0.231_Length_224\n+CTTTCAGGTACGCTTCCATGAACGTGGGCATTTACCCAACGTCGAACTTGATGCAGTTTA\n+CCGGAAGCATAACTGTTTGGAAATGTCCTATAAAGCTGAGCACTGTACAATTCCCGGTTG\n+CTACAGAGCAAGCCACCTCTTCACTAGTACACATTCTTGCTGGTTTAAATGGTGTATTAG\n+CGGTGGGACCAGACAATTAAAACGGATGCCAACATAAATGGGCA\n+>Locus_1_Transcript_2/7_Confidence_0.231_Length_143\n+AATGGCCTATAAAGCTGAGCACTGTACAATTCCCGGTTGCTACAGAGCAAGCCACCTCTT\n+CACTAGTACACATTCTTGCTGGTTTAAATGGTGTATTAGCGGTGGGACCAGACAATTAAA\n+ACGGATGCCAACATAAATGGGCA\n+>Locus_1_Transcript_3/7_Confidence_0.231_Length_407\n+ATCCGGGCTTTACATCGATGTTCGGTACTACTGCAACATCTAGGTCCGACCAAGTGTCCT\n+ATTTCAGGTACGCTTCCATGAACGTGGGCATTTACCCAACGTCGAACTTGATGCAGTTTA\n+CCGGAAGCATAACTGTTTGGAAATGTCCTATAAAGCTGAGCACTGTACAATTCCCGGTTG\n+CTACAGAGCAAGCCACCTCTTCACTAGTACACATTCTTGCTGGTTTAAATGGTGTATTAG\n+CGGTGGGACCAGACAATTCAAACCGGATGCCAACCTAACTGGGCAATTAGGCCACAATAA\n+GCCCAACTTGGTTGATGATCGAAACAGTGAGCCCCCTCCCATGTAATGGAAGACGTCGAC\n+GCAATCGTGCGAGACGTAATGACAGTTTAAGTCAGCCGACTAAGGGG\n+>Locus_1_Transcript_4/7_Confidence_0.077_Length_591\n+GTAAACAATTCCAAGTTCCAAATGGTTAACAACATCAAACCAAGACGGCAACGATCCCAA\n+CGTGTTGCCGTAACAACAACCCAAACAGCGCCTATTCCACAGCGAAACGTACCACGTAAT\n+CGGAGTGAGCCGCGTCAATAATGAGGCGGAATCGCCGTCGTGTACGTGGCATGAATATGG\n+CGGCGCTTTCCCGGCTTAGTCAGCCTGGGTTAGCGTTTCTCAAGTGTGCATTCGCACCAC\n+CTGACTTTCAGGTACGCTTCCATGAACGTGGGCATTTACCCAACGTCGAACTTGATGCAG\n+TTTACCGGAAGCATAACTGTTTGGAAATGTCCTATAAAGCTGAGCACTGTACAATTCCCG\n+GTTGCTACAGAGCAAGCCACCTCTTCACTAGTACACATTCTTGCTGGTTTAAATGGTGTA\n+TTAGCGGTGGGACCAGACAATTCAAACCGGATGCCAACCTAACTGGGCAATTAGGCCACA\n+ATAAGCCCAACTTGGTTGATGATCGAAACAGTGAGCCCCCTCCCATGTAATGGAAGACGT\n+CGACGCAATCGTGCGAGACGTAATGACAGTTTAAGTCAGCCGACTAAGGGG\n >Locus_1_Transcript_5/7_Confidence_0.231_Length_163\n AATAATGAGGCGGAATCGCCGTCGTGGACGTGGCAAGGCAAAGCTAACGGTAAGCGAAGG\n AAGGGCCCCCGAGGAGGCAAAATCAGCACTCGAAGAACGCCTCCGAAAGCTGGAGCTCAG\n CCACAGCCTTCCAACAACCGGAAGTGACCCCCCACCCGCTAAA\n->Locus_15_Transcript_1/1_Confidence_0.000_Length_436\n-AGCCAGAGCATCCTGTCTAGCACCCCTCTGCGTCCCTGGTGCATCTCGGTGTACATTCTT\n-AACTTACCTATTTAATCACCCATGCGAGAACGATACTACGAAGATACTGAACTCAATAAC\n-CTCAGCTACAGTGAACAAGATAAACAGCTAAAACAAATATGTCAAACGAGTACCTTAGAT\n-CAATCCTCATGCCTGAGAGAGGTCCCTCCAGTATACCAGACGACAACGTCCGCCGTCATT\n-GCGTACGACAAGAAACAATCACTGCGAACATTGTGGTCGGATCTTCTGGAAAAGGGGCCT\n-TTGTTCTGTTCCCTAACAATCCTAGCAGCCTTATTGGCGCTCATTTTAAGTATGATGACC\n-AGGGCAAATCTTACAAATACACCC'..b'100_Length_204\n+GGATCATGGCCACAGCATCCGCAAGACGTCCATTTGATGAAGCAGGTTTTAATCAAGCGT\n+ACTAGAATTGACGAAGATCAGGTCGATGCACTCATTGGGCGTTTTGCCGCAATGAAGGAT\n+GTCTGGGAGAAGATTACACGTGACAGCGAGGAGAGCGCCGCTGCATGTACGTTTGATGAA\n+GACGGCGTTATGCCGGGCTCCGTG\n+>Locus_62_Transcript_1/1_Confidence_0.000_Length_130\n+TGACAAAGTCATTCCATCCGACCCTGAGGAGCTGTATATTGCTGTATCACTAACAGAATC\n+CCTCAGGAAGCAGATACCGAACCTCAATGACATGCCATACTATGAGATGGGTGGCTATAG\n+GGTGTACAAC\n+>Locus_63_Transcript_1/1_Confidence_0.000_Length_371\n+AGTGTTCGCACTTCCAGATCCCACTACCAGCACTCGGAGTTTCTTGGGTCGCCAGCGGGA\n+GTATAGCTTACTCTGCTGCTGCAGCCTAGAATCACTCATAGCCGTTGGACATATGGCTTG\n+AGAAAAAAGGCTAGCTCCCACTGCGCGCTGCGATTGTACCTCAATAACGCCTATAATGTC\n+CACGCCCGAGAGCATGGTCTTGGGCATGGCACTGTAGGCGACCTGGCTCCCAGACTTTCG\n+AGGGCGATTTCGCCCTCTTCGACGGGGTCCTTGAACCATTGAGCAATTCTTTCCCACAAT\n+TTGACGAGAAGATGCGCTCTGTACGGTAACCTTGGGGGAACGACGGTTTCTGGTGGAAAA\n+ATTGTTTCCAC\n+>Locus_65_Transcript_1/1_Confidence_0.000_Length_158\n+CTGGCAAGCTAATTGCAAACAGTCTGCGAACCCTAACATGGTCCAACACTGGTGTAGACA\n+ATGGCAGCCACTACATGAACATGAACAACCTTAATGTCTCCCTTTTCCATGAGAATCCAC\n+CACCTGAACCCGTTGCCGCCATAAAAATAAACATCAAT\n+>Locus_66_Transcript_1/2_Confidence_0.333_Length_255\n+GTACATGCATGTACTGACGAACTATCATGTCGATGAGAGGGAAGCATCGAGCTTCGATTT\n+CTGGCAACTACTGAAACAGATAAAAAATGTTGCTGTGCCCTTGGCAGCCACCCTTGCCCC\n+CCAGTTCGCACCAATAATCGGTGCTGCCGATGGGTTAGCCAATGCACTATTGGGTGATAG\n+CGCCAGCGGAAGGCCTGTTGGCAATTCCGCTAGCGGTATGCCCATTTCAATGAGTAGGCG\n+TCTTAGAAACGCTTA\n+>Locus_66_Transcript_2/2_Confidence_0.333_Length_167\n+GTTGCCGTGCCATTGGCAGCCACCCTTGCCCCCCAGTTCGCACCAATAATCGGTGCTGCC\n+GATGGGTTAGCCAATGCACTATTGGGTGATAGCGCCAGCGGAAGGCCTGTTGGCAATTCC\n+GCTAGCGGTATGCCCATTTCAATGAGTAGGCGTCTTAGAAACGCTTA\n+>Locus_68_Transcript_1/1_Confidence_0.000_Length_211\n+TGAAAACTCTTTTAAACCCAGCACAATTTATCTCAGACATTCCTGATGATATAATGATCC\n+GACACGTAAACAGGGCCCAGACCATCACCTACAACTTGAAGTCAGGGTCCTCTGGCACCG\n+GCCTGATCGTGGTCTATCCAAACACCCCGTCGAGTATTAGCGGCTTCCATTACATATGGG\n+ATTCCGCTACCTCGAATTGGGTGTTTGATCA\n+>Locus_69_Transcript_1/1_Confidence_0.000_Length_164\n+CCAGAGGATTGGATGTTATTGACAGGATCCTATCGTAAGAGTAGTCAGACACTTCACTCA\n+AGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCATAAACACCCGCAGGTA\n+AGGTGCTGGACTTAATGCTTAGCGAGCCTGAAATCAGTCTGCCA\n+>Locus_70_Transcript_1/1_Confidence_0.000_Length_147\n+AAAAGTTAATTTTGTTAGTAAGAAAATTTGATAAAACTTACAGGAAAGGCGATAAAACTT\n+TCCTTTTAACAAGGTTCGATTAGTACACACGAGAAGAACCAAGAAGAAACTCGAGTGACA\n+TTAATGACTACAATAAGATGTTAGTAA\n+>Locus_72_Transcript_1/1_Confidence_0.000_Length_108\n+AAATGATCTCATCTCTGTATTCTGGCCGGAATGCTTGAACCATCGCCTTTTGAGCGATAT\n+TTCGTTGCATCCAGCCAGAAACCCGGCCATCAAGGTTGGAAAAATCCG\n+>Locus_73_Transcript_1/1_Confidence_0.000_Length_164\n+TCGGATAATATCCGGCTTTCCTGACATCCTTTTCATCCTGAAGGTCTCCAGATACACATT\n+AGCGTACTCGGATATCGTTCTACATGCCGAGCATAATCAACATTGGTATTATCCTGGAAG\n+GAACCCAACTGAGATCGCCGATGGGGTTTGTGAATTTGTCAGTG\n+>Locus_78_Transcript_1/1_Confidence_1.000_Length_154\n+AACGTGCGCAGGGACCTCATACCTCGAAGGAAGGGCCCCCCGAGGAGGCAAATCAGCACT\n+CGAAGAACGCCTCCGAAAGCTGGAGCTCAGCCCCCCACCCGCTAAACCGTAGGTGTCTCC\n+TAGGAGCACCCACACACGTTCTAGCCCGAAAGGG\n+>Locus_79_Transcript_1/1_Confidence_1.000_Length_154\n+AACGTGCGCAGGGACCTCATACCTCGAAGGAAGGGCCCCCCGAGGAGGCAAATCAGCACT\n+CGAAGAACGCCTCCGAAAGCTGGAGCTCAGCCCCCCACCCGCTAAACCGTAGCTGACTCC\n+TAGGAGCACCTACACCCGTTCTAGCCCGAAAGGG\n+>Locus_80_Transcript_1/1_Confidence_1.000_Length_101\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGCTGCTTCCGC\n+CGCCGTTTGAATGCGGTCGGGAAGTTCCTGGATTAGCGCAA\n+>Locus_81_Transcript_1/1_Confidence_1.000_Length_155\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGATTAGCGCGA\n+GTTTGCTTGGCATCGTTAAGCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCG\n+TCTTAATCTTCTCCCAGCATGATCCGTGTAACTCG\n+>Locus_82_Transcript_1/1_Confidence_1.000_Length_165\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGCTGCTTCCGC\n+CGCCGTTTGAATGCGGTCGGGAAGTTCCTGGATTAGCGCGAGTTTGCTTGGCATCGTTAA\n+GCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCGTCTT\n+>Locus_83_Transcript_1/1_Confidence_1.000_Length_196\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGCTGCTTCCGC\n+CGCCGTTTGAATGCGGTCGGGAAGTTCCTGGATTAGCGCGAGTTTGCTTGGCATCGTTAA\n+GCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCGTCTTAATCTTCTCCCAGCA\n+TGATCCGTGTAACTCG\n' |
| b |
| diff -r b4c9c085d709 -r d04fc71fb1b3 test-data/output.fa --- a/test-data/output.fa Tue Feb 05 17:21:41 2019 -0500 +++ b/test-data/output.fa Wed Mar 10 16:32:18 2021 +0000 |
| b |
| b'@@ -1,14 +1,3 @@\n->gi|262225307|gb|GQ342964.1|_Drosophila_melanogaster_tetravirus_SW-2009a_strain_DTRV_putative_RNA-de--Locus_42_Transcript_2/2_Confidence_0.333_Length_597_hit1_IdMatch=100.0,AligLength=593,E-val=0.0\n-TTCTGAGGTACGGCCAAATGCTGCCAATCCTGTTGGAGTTAGGCTCTATGCCCACAGCCA\n-CCATACCCAGGACATGAAGCTGTTGGGAGAAGCCTGGTCCTCCTCTGCCAAACTGGCTAA\n-GGAATACATCTGTGCAGCTATTTTGGAGGTTAACAACATCCCATACAAGAAGTCTAGCTT\n-TGCGACCCCTAATGTAGTGCCTCCCCCGCCTGAGTCTTCCTGGGCTCGGCAGGTTGAATA\n-CGCAACTGCCCCTAAAGCTGTGCCACAGATTGTTCCCGTTCATGAAACCCTGGATTTGGA\n-GCTGTTTCACAGTATAATGCAGCAATTCCCAGGGCACTGTCCCCGCCAGGTGCAGATGCT\n-TATTAGAGAGGTAAGTCATAAAAATCCTGATGACTACCGTGTGAGAATTCAAGACTTATT\n-CTCCCGGTTTCCACCTCCTAAAGTAGCATCGAAGAGATCACTGCTGAGCGCAGAACAAAG\n-GACGAGACTCAACAAAAAGACTCTCGACCGCAAAAAGAGGAAGAAAATTGCAAGTAAGCT\n-CTTGCCAACCCTATAACATCAAACAACCCAAACCTCAAATCAAGAATACAATTT\n >gi|262225307|gb|GQ342964.1|_Drosophila_melanogaster_tetravirus_SW-2009a_strain_DTRV_putative_RNA-de--Locus_42_Transcript_1/2_Confidence_0.333_Length_3138_hit1_IdMatch=100.0,AligLength=3001,E-val=0.0\n CCCAAGTATCCCTGTTTGTGGGATTATGGATGCTGTTGGTGTCCCGTTGCACCCCCCATC\n CATTAACAATCGGGGTGGGCATACTCATGTCACTCGCCAGATGGGCGGAGTACCCCACCC\n@@ -61,8 +50,189 @@\n CGCAGAACAAAGGACGAGACTCAACAAAAAGACTCTCGACCGCAAAAAGAGGAAGAAAAT\n TGCAAGTAAGCTCTTGCCAACCCTATAACATCAAACAACCCAAACCTCAAATCAAGAATA\n CAATTT\n+>gi|262225307|gb|GQ342964.1|_Drosophila_melanogaster_tetravirus_SW-2009a_strain_DTRV_putative_RNA-de--Locus_42_Transcript_2/2_Confidence_0.333_Length_597_hit1_IdMatch=100.0,AligLength=593,E-val=0.0\n+TTCTGAGGTACGGCCAAATGCTGCCAATCCTGTTGGAGTTAGGCTCTATGCCCACAGCCA\n+CCATACCCAGGACATGAAGCTGTTGGGAGAAGCCTGGTCCTCCTCTGCCAAACTGGCTAA\n+GGAATACATCTGTGCAGCTATTTTGGAGGTTAACAACATCCCATACAAGAAGTCTAGCTT\n+TGCGACCCCTAATGTAGTGCCTCCCCCGCCTGAGTCTTCCTGGGCTCGGCAGGTTGAATA\n+CGCAACTGCCCCTAAAGCTGTGCCACAGATTGTTCCCGTTCATGAAACCCTGGATTTGGA\n+GCTGTTTCACAGTATAATGCAGCAATTCCCAGGGCACTGTCCCCGCCAGGTGCAGATGCT\n+TATTAGAGAGGTAAGTCATAAAAATCCTGATGACTACCGTGTGAGAATTCAAGACTTATT\n+CTCCCGGTTTCCACCTCCTAAAGTAGCATCGAAGAGATCACTGCTGAGCGCAGAACAAAG\n+GACGAGACTCAACAAAAAGACTCTCGACCGCAAAAAGAGGAAGAAAATTGCAAGTAAGCT\n+CTTGCCAACCCTATAACATCAAACAACCCAAACCTCAAATCAAGAATACAATTT\n \n->gi|268053723|ref|NC_013499.1|_Drosophila_melanogaster_totivirus_SW-2009a,_complete_genome--Locus_7_Transcript_6/11_Confidence_0.154_Length_656_hit1_IdMatch=99.69,AligLength=655,E-val=0.0\n+>gi|262225299|gb|GQ342961.1|_Drosophila_melanogaster_totivirus_SW-2009a_strain_DTV,_complete_genome--Locus_7_Transcript_1/11_Confidence_0.154_Length_1632_hit1_IdMatch=99.16,AligLength=1069,E-val=0.0\n+ACAACCAGTAGAAGGTGTCAAACCAAATCCCGGACCATCAATAATTGAGCCAAATCATGG\n+ACCAAGCGATGAGTTGACTCAAGCCGAGATTCAGATTCTCCAACGACAGCTGGCAAAACA\n+AGACCAAAAACCAGCTCTGATTATGAAAGACCAGGAGAATCTACTGGACGATCTGACCGA\n+ATTAAAGACTACGGTACAACCACAGATTGACAATTCGGGATTCTTGGCTCATGTTGATCA\n+TGCAGCTGAATTCTCGGGAACTAAGGGTGAATATTTCGCCGTGATGAAATACATTCTCAC\n+GAATTCTCACTCCAATAGGTTCGCCTGTTTAGCGAATCTTACTGATATACCCGACGAGCC\n+AGTAGAGGCCTTTGTGCCTATGAGCTTTTCCAGACCAAAAAAAGAGAAAAAAGAAGAAAA\n+AAAAGATAACCACATGGAAGAGAAGAAGAAAAAAGAAAAACGAGAATCGATGGCAATGCC\n+AGCCAGTCAGAAGCCGAAACTTAAAACCGACGAAGAAAAGGAAATTGAAAGGAAAAACGT\n+CATCAGGAGAATTGTGGAACAATTCAGGGACAAGAAGATGTACAAGCTTGTACTATGGTT\n+AGACAAACCAATGAGCAGAAAATTTAAGACAGAAGTACTCGATGAGCTTTGGGGAAGTGG\n+TTGGCAGGAACGAAATAAGATGAACCAGTATGAATGGTTGTCTTACTGCTGGGCAAATAA\n+TGTCACTAAGGTCGATACTCAAACCGTGCTTCTATCTTATGACATCAAATGGCAACAACT\n+ACCTGCTGATATGAAAATGGCTATTCTCGGCGATTCGCGAGCTGATCTTGAAGCTCAAAA\n+AACTCACAATAAAGTGATGCATGCATACAACGGTAACCCTTTGTGTCAGGGATTTCAAGA\n+AGTTGAAGCTTCAAAAACCTTCCTCAACATCGCGGAAGAGAGTAATTCAGTTCTGAAACC\n+ATATACTGGACTGGAAGCTGAGAAATACATCACCAACATTGTAGGAGACATGAATCCGAA\n+TCAATCAAGGATCTTCGATCAGGACAGGCTTAGAGGTAACCAATACAATGCCAA\n+>gi|262225299|gb|GQ342961.1|_Drosophila_melanogaster_totivirus_SW-2009a_strain_DTV,_complete_genome--Locus_7_Transcript_1/11_Confidence_0.154_Length_1632_hit2_IdMatch=98.06,AligLength=566,E-val=0.0\n+TGCGATATTAGAGAAGATCCTACTCTAATATCATACGGATTCCATGGATCAGACGAGGAA\n+GACCCATACAGCCGATGAAGATGACAACTGAAAGGAAAACAAGAGGATACAGGTGCTTCG\n+CTTTGTTCGTGAGACGGCAAAGATTTGAACCTTTTTAGAAACAATTTAAATATG'..b'703.1|_Infectious_bursal_disease_virus_isolate_2009CAH495-SESW_polyprotein_gen--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n+>gi|22855166|ref|NC_004178.1|_Infectious_bursal_disease_virus_segment_A,_complete_sequence--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n TAAACACCCGCAGGTAAGGTGCTGGAC\n \n@@ -5041,47 +5081,7 @@\n TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n TAAACACCCGCAGGTAAGGTGCTGGAC\n \n->gi|667756318|gb|KF569805.1|_Infectious_bursal_disease_virus_isolate_HuB-1_segment_A,_complete_seque--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|89112096|gb|AY444873.3|_Infectious_bursal_disease_virus_VP5_protein_and_structural_polyprotein_g--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|395863892|gb|JN982256.1|_Infectious_bursal_disease_virus_isolate_SP33_VP2_protein_gene,_complete--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|630375502|gb|KJ547673.1|_Infectious_bursal_disease_virus_isolate_VRDC-IBDV-WZ_polyprotein_mRNA,_--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|452029935|gb|KC189836.1|_Infectious_bursal_disease_virus_strain_3529/92_polyprotein_mRNA,_comple--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n+>gi|803378129|emb|HG974563.1|_Infectious_bursal_disease_virus_segment_A,_complete_genome,_strain_891--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n TAAACACCCGCAGGTAAGGTGCTGGAC\n \n->gi|630375496|gb|KJ547670.1|_Infectious_bursal_disease_virus_isolate_Ventri-IBDV-Plus_polyprotein_mR--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|395863906|gb|JN982263.1|_Infectious_bursal_disease_virus_isolate_SC6_VP2_protein_gene,_complete_--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|395863910|gb|JN982265.1|_Infectious_bursal_disease_virus_isolate_SP21_VP2_protein_gene,_complete--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|367057603|gb|JN585293.1|_Infectious_bursal_disease_virus_isolate_CAHFS_K669_segment_A,_complete_--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|395863918|gb|JN982269.1|_Infectious_bursal_disease_virus_isolate_SC12_VP2_protein_gene,_complete--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n->gi|24306007|gb|AF322444.1|_Infectious_bursal_disease_virus_segment_A_VP5_protein_and_polyprotein_ge--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n-TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n-TAAACACCCGCAGGTAAGGTGCTGGAC\n-\n' |
| b |
| diff -r b4c9c085d709 -r d04fc71fb1b3 test-data/output.tab --- a/test-data/output.tab Tue Feb 05 17:21:41 2019 -0500 +++ b/test-data/output.tab Wed Mar 10 16:32:18 2021 +0000 |
| b |
| b'@@ -4,906 +4,906 @@\n # gi|262225307|gb|GQ342964.1|_Drosophila_melanogaster_tetravirus_SW-2009a_strain_DTRV_putative_RNA-de\n # Suject Length: 3005\n # Total Subject Coverage: 3001\n-# Relative Subject Coverage: 0.998668885191\n+# Relative Subject Coverage: 0.9986688851913478\n # Best Bit Score: 5413.0\n # Mean Bit Score: 3241.5\n+Locus_42_Transcript_1/2_Confidence_0.333_Length_3138\t100.0\t3001\t1\t3001\t95.6\t0.0\t5413.0\n Locus_42_Transcript_2/2_Confidence_0.333_Length_597\t100.0\t593\t2409\t3001\t99.2\t0.0\t1070.0\n-Locus_42_Transcript_1/2_Confidence_0.333_Length_3138\t100.0\t3001\t1\t3001\t95.6\t0.0\t5413.0\n- \n-# gi|268053723|ref|NC_013499.1|_Drosophila_melanogaster_totivirus_SW-2009a,_complete_genome\n-# Suject Length: 6780\n-# Total Subject Coverage: 6765\n-# Relative Subject Coverage: 0.997787610619\n-# Best Bit Score: 8001.0\n-# Mean Bit Score: 2184.97272727\n-Locus_10_Transcript_7/8_Confidence_0.111_Length_255\t100.0\t26\t6549\t6524\t9.8\t0.001\t48.2\n-Locus_7_Transcript_10/11_Confidence_0.154_Length_4093\t99.66\t4093\t542\t4628\t100.0\t0.0\t7319.0\n-Locus_7_Transcript_5/11_Confidence_0.308_Length_4519\t99.67\t3956\t679\t4628\t87.5\t0.0\t7077.0\n-Locus_7_Transcript_5/11_Confidence_0.308_Length_4519\t98.06\t566\t1\t563\t12.5\t0.0\t967.0\n-Locus_10_Transcript_4/8_Confidence_0.444_Length_1097\t99.91\t1087\t6731\t5645\t99.0\t0.0\t1956.0\n-Locus_7_Transcript_4/11_Confidence_0.154_Length_571\t99.82\t571\t3429\t3999\t99.8\t0.0\t1025.0\n-Locus_10_Transcript_3/8_Confidence_0.222_Length_529\t99.43\t529\t6170\t5645\t99.8\t0.0\t939.0\n-Locus_10_Transcript_6/8_Confidence_0.333_Length_1121\t99.91\t1121\t6765\t5645\t99.9\t0.0\t2017.0\n-Locus_7_Transcript_11/11_Confidence_0.000_Length_1206\t99.17\t1206\t542\t1741\t99.9\t0.0\t2131.0\n-Locus_10_Transcript_8/8_Confidence_0.000_Length_1134\t99.89\t905\t6549\t5645\t79.7\t0.0\t1627.0\n-Locus_10_Transcript_1/8_Confidence_0.222_Length_565\t99.81\t530\t5670\t5141\t93.6\t0.0\t951.0\n-Locus_7_Transcript_9/11_Confidence_0.154_Length_552\t99.09\t551\t4603\t5153\t99.6\t0.0\t971.0\n-Locus_7_Transcript_1/11_Confidence_0.154_Length_1632\t99.16\t1069\t679\t1741\t65.4\t0.0\t1889.0\n-Locus_7_Transcript_1/11_Confidence_0.154_Length_1632\t98.06\t566\t1\t563\t34.5\t0.0\t967.0\n-Locus_7_Transcript_7/11_Confidence_0.462_Length_4481\t99.6\t4481\t679\t5153\t100.0\t0.0\t8001.0\n-Locus_10_Transcript_5/8_Confidence_0.333_Length_628\t99.84\t628\t6765\t6138\t99.8\t0.0\t1128.0\n-Locus_8_Transcript_2/4_Confidence_0.200_Length_117\t100.0\t26\t5645\t5670\t21.4\t4e-04\t48.2\n-Locus_7_Transcript_8/11_Confidence_0.154_Length_552\t99.28\t552\t4602\t5153\t99.8\t0.0\t978.0\n-Locus_7_Transcript_6/11_Confidence_0.154_Length_656\t99.69\t655\t3974\t4628\t99.7\t0.0\t1173.0\n-Locus_10_Transcript_2/8_Confidence_0.111_Length_1023\t99.9\t1023\t6163\t5141\t99.9\t0.0\t1840.0\n-Locus_7_Transcript_2/11_Confidence_0.077_Length_1069\t99.06\t1069\t679\t1741\t99.9\t0.0\t1884.0\n-Locus_7_Transcript_3/11_Confidence_0.154_Length_1743\t99.89\t1742\t1716\t3457\t99.9\t0.0\t3133.0\n \n # gi|262225299|gb|GQ342961.1|_Drosophila_melanogaster_totivirus_SW-2009a_strain_DTV,_complete_genome\n # Suject Length: 6780\n # Total Subject Coverage: 6765\n-# Relative Subject Coverage: 0.997787610619\n+# Relative Subject Coverage: 0.9977876106194691\n # Best Bit Score: 8001.0\n-# Mean Bit Score: 2184.97272727\n-Locus_10_Transcript_7/8_Confidence_0.111_Length_255\t100.0\t26\t6549\t6524\t9.8\t0.001\t48.2\n-Locus_7_Transcript_10/11_Confidence_0.154_Length_4093\t99.66\t4093\t542\t4628\t100.0\t0.0\t7319.0\n-Locus_7_Transcript_5/11_Confidence_0.308_Length_4519\t99.67\t3956\t679\t4628\t87.5\t0.0\t7077.0\n-Locus_7_Transcript_5/11_Confidence_0.308_Length_4519\t98.06\t566\t1\t563\t12.5\t0.0\t967.0\n-Locus_10_Transcript_4/8_Confidence_0.444_Length_1097\t99.91\t1087\t6731\t5645\t99.0\t0.0\t1956.0\n-Locus_7_Transcript_4/11_Confidence_0.154_Length_571\t99.82\t571\t3429\t3999\t99.8\t0.0\t1025.0\n-Locus_10_Transcript_3/8_Confidence_0.222_Length_529\t99.43\t529\t6170\t5645\t99.8\t0.0\t939.0\n-Locus_10_Transcript_6/8_Confidence_0.333_Length_1121\t99.91\t1121\t6765\t5645\t99.9\t0.0\t2017.0\n-Locus_7_Transcript_11/11_Confidence_0.000_Length_1206\t99.17\t1206\t542\t1741\t99.9\t0.0\t2131.0\n-Locus_10_Transcript_8/8_Confidence_0.000_Length_1134\t99.89\t905\t6549\t5645\t79.7\t'..b'egment_A,_complete_sequence,_genomic_\n-# Suject Length: 3262\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0251379521766\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t538\t457\t49.4\t2e-04\t50.0\n- \n-# gi|667756318|gb|KF569805.1|_Infectious_bursal_disease_virus_isolate_HuB-1_segment_A,_complete_seque\n-# Suject Length: 3260\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0251533742331\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t538\t457\t49.4\t2e-04\t50.0\n- \n-# gi|89112096|gb|AY444873.3|_Infectious_bursal_disease_virus_VP5_protein_and_structural_polyprotein_g\n-# Suject Length: 3260\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0251533742331\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t538\t457\t49.4\t2e-04\t50.0\n- \n-# gi|395863892|gb|JN982256.1|_Infectious_bursal_disease_virus_isolate_SP33_VP2_protein_gene,_complete\n-# Suject Length: 1356\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0604719764012\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t408\t327\t49.4\t2e-04\t50.0\n- \n-# gi|630375502|gb|KJ547673.1|_Infectious_bursal_disease_virus_isolate_VRDC-IBDV-WZ_polyprotein_mRNA,_\n-# Suject Length: 3084\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.026588845655\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t446\t365\t49.4\t2e-04\t50.0\n- \n-# gi|452029935|gb|KC189836.1|_Infectious_bursal_disease_virus_strain_3529/92_polyprotein_mRNA,_comple\n-# Suject Length: 3039\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0269825600526\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t408\t327\t49.4\t2e-04\t50.0\n- \n-# gi|630375496|gb|KJ547670.1|_Infectious_bursal_disease_virus_isolate_Ventri-IBDV-Plus_polyprotein_mR\n-# Suject Length: 3040\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0269736842105\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t409\t328\t49.4\t2e-04\t50.0\n- \n-# gi|395863906|gb|JN982263.1|_Infectious_bursal_disease_virus_isolate_SC6_VP2_protein_gene,_complete_\n-# Suject Length: 1356\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0604719764012\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t408\t327\t49.4\t2e-04\t50.0\n- \n-# gi|395863910|gb|JN982265.1|_Infectious_bursal_disease_virus_isolate_SP21_VP2_protein_gene,_complete\n-# Suject Length: 1356\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0604719764012\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t408\t327\t49.4\t2e-04\t50.0\n- \n-# gi|367057603|gb|JN585293.1|_Infectious_bursal_disease_virus_isolate_CAHFS_K669_segment_A,_complete_\n-# Suject Length: 3184\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0257537688442\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t532\t451\t49.4\t2e-04\t50.0\n- \n-# gi|395863918|gb|JN982269.1|_Infectious_bursal_disease_virus_isolate_SC12_VP2_protein_gene,_complete\n-# Suject Length: 1356\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0604719764012\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t408\t327\t49.4\t2e-04\t50.0\n- \n-# gi|24306007|gb|AF322444.1|_Infectious_bursal_disease_virus_segment_A_VP5_protein_and_polyprotein_ge\n-# Suject Length: 3085\n-# Total Subject Coverage: 82\n-# Relative Subject Coverage: 0.0265802269044\n-# Best Bit Score: 50.0\n-# Mean Bit Score: 50.0\n-Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t454\t373\t49.4\t2e-04\t50.0\n' |
| b |
| diff -r b4c9c085d709 -r d04fc71fb1b3 test-data/un_sequences.fa --- a/test-data/un_sequences.fa Tue Feb 05 17:21:41 2019 -0500 +++ b/test-data/un_sequences.fa Wed Mar 10 16:32:18 2021 +0000 |
| b |
| b'@@ -1,21 +1,69 @@\n->Locus_8_Transcript_1/4_Confidence_0.400_Length_658\n-TTTGCTTTTTTCTTTTATTCTCTGCCTTCCATCTTCACTATGACCATCTCATCATTAAGG\n-CAAATCCGAAGAGGCTCTAAGACAATCGGATCGATTTATGCAAATGATACTCCAATCTTC\n-GAGCGTTTCTTCCTGTGCCTCTCCGCCACCACGAAGAATAGCAACTCGTCATTATGGCAA\n-ACAAAGATCGAAGACCAGTTTTCACCTCAATCTAATGATGTTTGCCTCATTTATCCTGAT\n-CCGCTGTGATCCGCTTGTAATCAATCCCCATCCATCCTCAGCCAGGGGCAAGTTCAAGTT\n-GCCAGCTCTCCGCAGCGATCTCCTCCACGGTTCCTTTATGATCTCGAGTTTCATCCTTTC\n-CACTCCACCTGGCTTGAGTGGGTGGCTCAACATAATGGGGGGATCTGCCGTTATTCGGTT\n-GTATCCCGATCGCAGCCGCAGCTGCAAATAAAATAAGAGTCGACTTCAACACTCGACTTG\n-GCTTAATGCAAAGTGCCGCTGAGGAGAGATGCGTGGGTGGGCCCACATTGGGAAGCCAAC\n-TGGGTCTGCTCTAAGTCGCAGAGTGCAGATAAACACTGCCAAAAAATATGTGACTAAAAT\n-CGAATTTATTTCCTGGGTCGTCGATTAGGAAATAAGAATGAGAGGTAAATGCGCAGTC\n->Locus_32_Transcript_4/5_Confidence_0.286_Length_242\n-GGTGGTGCAATTTGGAGTCTGGCCGCGCGATTAGCTAAGCGCTGCGACCATATAATCGCA\n-TTGACAACTCCGATTTGTGTGCGGGAGTCGAGGAAGTGCTCCACTTTATGGCAGTCACAA\n-TTTCATGTTTGAATGTTTCGCCTCGATAGGATTCGGAATGGGGATTTTCGAATTGCGATT\n-TGGTCCGCTGGCCTGGCCTGGACTGGCTGGCCGCTTGTCCGATTCTATCGAATGCGTGTC\n-TC\n+>Locus_3_Transcript_1/5_Confidence_0.125_Length_388\n+CCACATAATACAAATAAATTTCAGGCATCGGAAAAATATATAAGGAGATTGCAGCCAGCA\n+CCTTGGGGAACCAGCAAAGATCTCAGCTCGTTATGGCCATCGACATTGTCCGGCATCTGA\n+CAAATTTTTGGATTTTGCTTCACGGCGATCATCTCTCAATCTCAATTTTGGACCCAATCT\n+CGATCGCCATCTTCCCCGGCTGCCAATCCATTTGGTCTGTGGCCAGTAGCTGTGGGGCTT\n+GATTGCGTCGATCGGCCTGTGTGGAATTGGAATTGGAAGTGGAGCTCTAGTTAACAGTTG\n+AGACCTGGACACCGAATGCGTGTCTCCGCCCCCGGGAACTGCAGAAGCAACAACTGCAGC\n+CGCAAACAATTGACAGAGACAAGCGCCT\n+>Locus_3_Transcript_2/5_Confidence_0.250_Length_408\n+GATGGGAGGAAGGATGCCGGTGATGCGCCTTACGACACCTTAAGGTGTCATAGACACGGT\n+GAGGTGGCAATTAGGGCGCACCGTGGGGAACCAGCAAAGATCTCAGCTCGTTATGGCCAT\n+CGACATTGTCCGGCATCTGACAAATTTTTGGATTTTGCTTCACGGCGATCATCTCTCAAT\n+CTCAATTTTGGACCCAATCTCGATCGCCATCTTCCCCGGCTGCCAATCCATTTGGTCTGT\n+GGCCAGTAGCTGTGGGGCTTGATTGCGTCGATCGGCCTGTGTGGAATTGGAATTGGAAGT\n+GGAGCTCTAGTTAACAGTTGAGACCTGGACACCGAATGCGTGTCTCCGCCCCCGGGAACT\n+GCAGAAGCAACAACTGCAGCCGCAAACAATTGACAGAGACAAGCGCCT\n+>Locus_3_Transcript_3/5_Confidence_0.375_Length_130\n+TCCCATCGGCGGGGGATGGGAGGAAGGATGCCGGTGATGCGCCTTACGACACCTTAAGGT\n+GTCATAGACACGGTGAGGTGGCAATTAGGGCGCACCGTGGGGCACCCTTCACCGTCAACC\n+CTTCTTATCC\n+>Locus_4_Transcript_1/5_Confidence_0.222_Length_234\n+TTTGAACTGGGGTTTCTCATTGAAAAAAGATATGATAGTGGCCTATGGTCACTTTGTACT\n+AAGAAATGTCCACCATATACGTATGGTCTGAAGTGATTTATTGCCCAGTGAATAGCTGCT\n+AGCTCCTGCTCTGTAGTGGACTTATTACTTTCGCCTTTTGTAAAGCTTCTTGAAGCGTAT\n+GCCACTGGTAGCTGTTGACCGTTATGGTCTTGAGATAGTGCCGCTCCACATGCC\n+>Locus_4_Transcript_2/5_Confidence_0.444_Length_332\n+CCTTCCCCTTGAGACATTCTACTGTGAATTCAAACTCCTCCAAGTCTAGTCTCATTCTGG\n+TTAATTTTGAACTGGGGTTTCTCATTGAAAAAAGATATGATAGTGGCCTATGGTCACTTT\n+GTACTAAGAAATGTCCACCATATACGTATGGTCTGAAGTGATTTATTGCCCAGTGAATAG\n+CTGCTAGCTCCTGCTCTGTAGTGGACTTATTACTTTCGCCTTTTGTAAAGCTTCTTGAAG\n+CGTATGCCACTGGTAGCTGTTGACCGTTATGGTCCTGAGATAGTACCGCTCCACATGCTT\n+GTTTACTAGCATCTGTGGTTATGCAAAATTGT\n+>Locus_4_Transcript_3/5_Confidence_0.222_Length_487\n+GTCTTTTTCTTTCTCATTTGGTTCATGCAATTTTTCACCTGCGCAGGTATTTTTCTGTCT\n+TGTTGTTGATCTTGTTGTTGCCTTTGGTATCTGTCTATTTATTGCTTTAAGTTCTCCGAT\n+TGTTATTCGGGACAATGCGTCTGCGACATGATTATCCCTCCCCTTGAGATATTCTACTGT\n+GAATTCAAACTCCTCCAAGTCTAGTCTCATTCTGGTTAATTTTGAACTGGGGTTTCTCAT\n+TGAAAAAAGATATGATAGTGGCCTATGGTCACTTTGTACTAAGAAATGTCCACCATATAC\n+GTATGGTCTGAAGTGATTTATTGCCCAGTGAATAGCTGCTAGCTCCTGCTCTGTAGTGGA\n+CTTATTACTTTCGCCTTTTGTAAAGCTTCTTGAAGCGTATGCCACTGGTAGCTGTTGACC\n+GTTATGGTCCTGAGATAGTACCGCTCCACATGCTTGTTTACTAGCATCTGTGGTTATGCA\n+AAATTGT\n+>Locus_5_Transcript_1/6_Confidence_0.333_Length_630\n+CGCCTGCATTAAAGCATTCCCACAGATTTACGGTCTCACTTTCCCCCTTCAAAAGATTGC\n+AGGCAACTTCTGCCAAGTGTTCAGCTCCTTTTTAGAGCATCGCAATGGATCTTGGGGCAG\n+CTGAGACTTTTCCGGTATTCCACTCGACAGCAACTTTCATGTTCTCGGCAGATGCGCGGC\n+AAATGATAACATAAAATGCGTTTTCCATTTCGAGGCATAATTTCGTGGCGCGGGCAAAAC\n+CATTTTCCGCATTTTCTCGGCCAATTTTCGTTGCCTCTGCGTGCTGTTCACAACTTGGCG\n+GTGAAAGAGGCACTATGAAAGAATCAAAAGCAGTCAACTCCTGTTCAGCAGCAAACAAAC\n+AGCAAAGAGGCGGGAAAAACAATATTGTATTTTGCGGAAGGGGAAAGGTACGAGGTCCCC\n+CCCGGGCTCCAGAAGTCTGCTGGAGCAATAAAAATAATAATCGAACTGCAGCCGCATTGC\n+GTTGGCCGCAAGGTCATTGCCCA'..b'AAAACCAATGAAAGCAGAACAGAGGTCTTATTTCATTATCC\n+>Locus_41_Transcript_2/2_Confidence_0.000_Length_213\n+CAATTGCTGACTGTAACCTTTCGCCCAATAAGTTAGCTGCAGCTCCAGCTCCAGCTTCAG\n+TCTGGACTCCAATTTCGACTCGGATGCGGCCCAGGTGGCCAGCTGCAGTTGCTGGGCGGC\n+AATAAAACATTTACCACCGAATTAGCCCAGTCGGAGAGTAGTTCAAGTAGTTTAAGTGCA\n+AGACCACTTAAAATTCAGTTACGACTGCTGCCC\n+>Locus_50_Transcript_1/1_Confidence_0.000_Length_132\n+TATAATGGATCATATCCGCGAATATATCACTGACATGACCCATTTTTAAGTTGTTGGTGA\n+ACAAGTCATGTTGAAGAATTTCCGCGCTGACAAAGCAAATAAGCACGAGGAACACAAACA\n+TTTTGATATGAC\n+>Locus_53_Transcript_1/2_Confidence_0.333_Length_220\n+ATGCTCATCTTAGTATATGTTGATGATTTGATTCTAGCGTGCCAGTCAAGAGAAGATATG\n+GAGGATCTGAAAGCCAAGATTTCGGAGTCTTCGAGTGCACGGACAAGGGTCCACTGCATT\n+TGTTCTTAGGCATGGAGGTGCAACGAGATGGCGACCTTGGAGAAATCACTTTGGGCCATT\n+CGCAATATATCAAGGAACTATTGCGGGCATATGGCAGCGA\n+>Locus_53_Transcript_2/2_Confidence_0.333_Length_144\n+GATTTCGGAGTCTTTCGAGTGCACGGACAAGGGTCCACTGCATTTGTTCTTAGGCATGGA\n+GGTGCAACGAGATGGCGACCTTGGAGAAATCACTTTGGGCCATTCGCAATATATCAAGGA\n+ACTATTGCGGGCATATGGCAGCGA\n+>Locus_61_Transcript_1/2_Confidence_0.667_Length_164\n+CACCGTCCTGCTGTCTATATCAACCAACGCCTTTCATGGGGTCTCATGAGCGGGAAGTTT\n+GGCACTTTAACCCGACGTTTGGTTCATCCCACAGCGCCAGTTCTGCTTACCAAAAGTGGC\n+CCACTGGGCACATTATATCATAACCTTGAACTTCATATCAGGAA\n+>Locus_61_Transcript_2/2_Confidence_0.333_Length_147\n+AGGCAATCAACGCCTTTCATGGGGTCTCATGAGCGGGAAGTTTGGCACTTTAACCCGACG\n+TTTGGTTCATCCCACAGCGCCAGTTCTGCTTACCAAAAGTGGCCCACTGGGCACATTATA\n+TCATAACCTTGAACTTCATATCAGGAA\n >Locus_64_Transcript_1/1_Confidence_0.000_Length_172\n AGGGATGTTGTTTCCGTAAAGCGCCACGGTTCCTGTGGTGTCTCGTGCGCTCTATTCGGC\n CCTTGAAAAACCGAGGGAGGCTATTTGAATTTCGTGCCAGGCCGTACCGATATCCGCAGC\n AGGTCTCCAAGGTGAACAGCCTCTAGTCGATAGAATAATGTAGGTAAGGGAA\n->Locus_5_Transcript_6/6_Confidence_0.111_Length_262\n-AGGGATTAATCCCTAATCAAAGATCCATTCTTACACTGAAGTTTGGTTAAGATTGAAGCT\n-ATAGCTTGAGCGGAGTTAAGCCATCTTCAAGGAAACTTCTTCTTACGAATCGCAGCGATC\n-CCTAAACCTATTTCGAGTTGACCCCAATTTCCAGACCTCCAATGGTTATTACGGTTAACC\n-AGAGATTACCCAACCGACTAACCGACTAACATTTGCCACTTCATTGCCCTGCCACCTTCC\n-GCCGAACGCCGAACGCCGAACG\n->Locus_50_Transcript_1/1_Confidence_0.000_Length_132\n-TATAATGGATCATATCCGCGAATATATCACTGACATGACCCATTTTTAAGTTGTTGGTGA\n-ACAAGTCATGTTGAAGAATTTCCGCGCTGACAAAGCAAATAAGCACGAGGAACACAAACA\n-TTTTGATATGAC\n->Locus_61_Transcript_1/2_Confidence_0.667_Length_164\n-CACCGTCCTGCTGTCTATATCAACCAACGCCTTTCATGGGGTCTCATGAGCGGGAAGTTT\n-GGCACTTTAACCCGACGTTTGGTTCATCCCACAGCGCCAGTTCTGCTTACCAAAAGTGGC\n-CCACTGGGCACATTATATCATAACCTTGAACTTCATATCAGGAA\n+>Locus_67_Transcript_1/2_Confidence_0.333_Length_210\n+TGCAACAACTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACT\n+TGCCCTCCAATTGGTCCTTGTTAAATGCGCTGGATGGTGGTGGTTTTTGGCAAAACACAG\n+TGGTGTCTCGATAGCGGGGCTACCAGTCACATGTGCTGTGACAGAGGTGTTTTTACTGAG\n+TATGAAGAGCACACTGAAAAAATTAGTCTT\n+>Locus_67_Transcript_2/2_Confidence_0.333_Length_155\n+AGCGACACAAAAACAATGCTCCTTGTTAAATGCGCTGGATGGTGGTGGTTTTTGGCAAAA\n+CACAGTGGTGTCTCGATAGCGGGGCTACCAGTCACATGTGCTGTGACAGAGGTGTTTTTA\n+CTGAGTATGAAGAGCACACTGAAAAAATTAGTCTT\n+>Locus_71_Transcript_1/2_Confidence_0.333_Length_170\n+GATTAATGAAAACATCTTTGGCAAATGCTTTCGCAGTCGGACGTCTCGCTACGGTCCAAG\n+AATTTCACCTCTCGCGTCGTAATACTAATGCCCCCAAACTGCTTCTATTAATCATTACCT\n+CTTGATCTGAAAACCAATGAAAGCAGAACAGAGGTCTTATTTCATTATCC\n+>Locus_71_Transcript_2/2_Confidence_0.333_Length_106\n+ACACCTCTCGCGTCGTAATACTAATGCCCCCAAACTGCTTCTATTAATCATTACCTCTTG\n+ATCTGAAAACCAATGAAAGCAGAACAGAGGTCTTATTTCATTATCC\n+>Locus_74_Transcript_1/2_Confidence_0.333_Length_232\n+ATCATATCCAACAGCTCTTCAGCTCTGCTCCTCGTTATCTTCGGAAATGGTTGCACATGG\n+ATTTTTGCCAGCATGCACGTCTTGCATACTGCGTCTGGTTTGAAAACGACCTTTTCAACA\n+CCGTACACCATCCTCTTCCTCACCATCTCCTGTAGGCTGCTTGTATTCAAATGGCCATAC\n+CTTTTATGCCATAGTGAACCATCAGCATCAACGGCCGCAAAACAACTGTTAT\n+>Locus_74_Transcript_2/2_Confidence_0.333_Length_109\n+CATTCGCTCTTCCTCCTCACCATCTCCTGTAGGCTGCTTGTATTCAAATGGCCATACCTT\n+TTATGCCATAGTGAACCATCAGCATCAACGGCCGCAAAACAACTGTTAT\n+>Locus_76_Transcript_1/1_Confidence_0.500_Length_196\n+TCAGTTTCAGCTTTGTTTTTCAGCCTGCTGCTACCATTCAGGTTCCACCTCCTTTTCAGT\n+TTAAAGTGGGTTTCTCGGCCAGAGTTGGGCAATTCCATTACTCTATTAGGGGGAAAAAAT\n+GGTAATTTGCTGCTCGATTATGACGAAGTCATTTGATCCGCTTCACATGTGACGTCGTCT\n+TTTTGTTGGGCCTGTC\n' 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