| Previous changeset 7:7b9218c5e126 (2019-03-04) Next changeset 9:a811afe91eab (2019-03-04) |
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Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty |
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modified:
kraken2.xml |
| b |
| diff -r 7b9218c5e126 -r d120504e741a kraken2.xml --- a/kraken2.xml Mon Mar 04 17:07:17 2019 -0500 +++ b/kraken2.xml Mon Mar 04 17:17:43 2019 -0500 |
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| @@ -9,6 +9,7 @@ <version_command>kraken2 --version</version_command> <command detect_errors="exit_code"> <![CDATA[ + @SET_DATABASE_PATH@ kraken2 --threads \${GALAXY_SLOTS:-1} --db '$kraken2_database' @@ -35,7 +36,6 @@ <when value="yes"> <param format="fasta,fastq" name="forward_input" type="data" label="Forward strand" help="FASTA or FASTQ dataset"/> <param format="fasta,fastq" name="reverse_input" type="data" label="Reverse strand" help="FASTA or FASTQ dataset"/> - <param name="check_names" type="boolean" checked="False" truevalue="--paired --check-names" falsevalue="--paired" label="Verify read names match" help="--check-names" /> </when> <when value="no"> <param format="fasta,fastq" label="Input sequences" name="input_sequences" type="data" help="FASTA or FASTQ datasets"/> |