| Next changeset 1:8b9b960c9409 (2019-05-07) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/autodock_vina commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472 |
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added:
prepare_receptor.xml test-data/3u1i_for_DM.pdb test-data/3u1i_for_DM.pdbqt |
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| diff -r 000000000000 -r d15e5a2a7558 prepare_receptor.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prepare_receptor.xml Sat Jun 04 12:37:59 2016 -0400 |
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| @@ -0,0 +1,92 @@ +<tool id="prepare_receptor" name="Prepare receptor" version="0.1.0"> + <description>Tool to prepare receptor for Autodock Vina</description> + <requirements> + <requirement type="package" version="1.5.6">mgltools</requirement> + </requirements> + <stdio> + <exit_code range="1" /> + </stdio> + <command><![CDATA[ + ln -s $receptor ./receptor.pdb && prepare_receptor4.py -r ./receptor.pdb -o "$file_output" -v -U nphs_lps -A hydrogens + ]]></command> + <inputs> + <param type="data" name="receptor" format="pdb" label="Select a PDB file" /> + </inputs> + <outputs> + <data name="file_output" format="pdbqt" /> + </outputs> + <tests> + <test> + <param name="receptor" value="3u1i_for_DM.pdb"/> + <output name="file_output" file="3u1i_for_DM.pdbqt"/> + </test> + </tests> + <help><![CDATA[ + ** What it does? ** + + This tool uses the MGLTools programming packages to convert a pdb molecule file to pdbqt molecule file, what is the Autodock Vina program uses to perform molecular docking. + + ** input ** + + It's required at least one pdb dataset in history, what is informed in ligand field, for use the tool. The pdb molecule file looks like the following example: + + ATOM 1 C ACE A 49 7.007 -4.529 9.096 1.00 0.00 C + ATOM 2 O ACE A 49 7.822 -3.710 8.650 1.00 0.00 O + ATOM 3 CH3 ACE A 49 6.132 -5.342 8.166 1.00 0.00 C + ATOM 4 1HH3 ACE A 49 6.747 -5.942 7.510 1.00 0.00 H + ATOM 5 2HH3 ACE A 49 5.492 -5.996 8.739 1.00 0.00 H + ATOM 6 3HH3 ACE A 49 5.518 -4.686 7.568 1.00 0.00 H + ATOM 7 N ASP A 50 6.886 -4.713 10.549 1.00 65.94 N + ATOM 8 CA ASP A 50 7.845 -3.806 11.248 1.00 64.98 C + ATOM 9 C ASP A 50 8.508 -4.537 12.430 1.00 62.63 C + ATOM 10 O ASP A 50 7.898 -5.423 13.032 1.00 63.05 O + ATOM 11 CB ASP A 50 7.146 -2.511 11.685 1.00 66.87 C + ATOM 12 CG ASP A 50 8.017 -1.267 11.465 1.00 68.22 C + ATOM 13 OD1 ASP A 50 9.140 -1.204 12.030 1.00 67.77 O + ATOM 14 OD2 ASP A 50 7.570 -0.351 10.729 1.00 69.97 O1- + ATOM 15 N LEU A 51 9.760 -4.189 12.730 1.00 60.07 N + ATOM 16 CA LEU A 51 10.551 -4.934 13.712 1.00 57.24 C + ATOM 17 C LEU A 51 10.592 -4.245 15.069 1.00 56.84 C + ATOM 18 O LEU A 51 10.689 -3.020 15.157 1.00 57.09 O + ATOM 19 CB LEU A 51 11.979 -5.179 13.205 1.00 55.78 C + ATOM 20 CG LEU A 51 12.250 -6.074 11.987 1.00 54.47 C + ATOM 21 CD1 LEU A 51 13.717 -6.000 11.623 1.00 52.72 C + ATOM 22 CD2 LEU A 51 11.857 -7.523 12.233 1.00 53.53 C + ATOM 23 N THR A 52 10.527 -5.061 16.117 1.00 55.68 N + ATOM 24 CA THR A 52 10.525 -4.607 17.507 1.00 55.35 C + ATOM 25 C THR A 52 11.729 -5.165 18.262 1.00 53.35 C + ATOM 26 O THR A 52 12.413 -6.076 17.786 1.00 52.40 O + ATOM 27 CB THR A 52 9.185 -4.964 18.195 1.00 56.95 C + + ** output ** + + The output is a pdbqt molecule file converted from a pdb molecule file. The pdbqt molecule file looks like the following example: + + ATOM 1 C ACE A 49 7.007 -4.529 9.096 1.00 0.00 0.214 C + ATOM 2 O ACE A 49 7.822 -3.710 8.650 1.00 0.00 -0.274 OA + ATOM 3 CH3 ACE A 49 6.132 -5.342 8.166 1.00 0.00 0.117 C + ATOM 4 N ASP A 50 6.886 -4.713 10.549 1.00 65.94 -0.348 N + ATOM 5 HN ASP A 50 6.246 -5.360 11.009 1.00 0.00 0.163 HD + ATOM 6 CA ASP A 50 7.845 -3.806 11.248 1.00 64.98 0.186 C + ATOM 7 C ASP A 50 8.508 -4.537 12.430 1.00 62.63 0.241 C + ATOM 8 O ASP A 50 7.898 -5.423 13.032 1.00 63.05 -0.271 OA + ATOM 9 CB ASP A 50 7.146 -2.511 11.685 1.00 66.87 0.147 C + ATOM 10 CG ASP A 50 8.017 -1.267 11.465 1.00 68.22 0.175 C + ATOM 11 OD1 ASP A 50 9.140 -1.204 12.030 1.00 67.77 -0.648 OA + ATOM 12 OD2 ASP A 50 7.570 -0.351 10.729 1.00 69.97 -0.648 OA + ATOM 13 N LEU A 51 9.760 -4.189 12.730 1.00 60.07 -0.346 N + ATOM 14 HN LEU A 51 10.177 -3.384 12.264 1.00 0.00 0.163 HD + ATOM 15 CA LEU A 51 10.551 -4.934 13.712 1.00 57.24 0.177 C + ATOM 16 C LEU A 51 10.592 -4.245 15.069 1.00 56.84 0.241 C + ATOM 17 O LEU A 51 10.689 -3.020 15.157 1.00 57.09 -0.271 OA + ATOM 18 CB LEU A 51 11.979 -5.179 13.205 1.00 55.78 0.038 C + ATOM 19 CG LEU A 51 12.250 -6.074 11.987 1.00 54.47 -0.020 C + ATOM 20 CD1 LEU A 51 13.717 -6.000 11.623 1.00 52.72 0.009 C + ATOM 21 CD2 LEU A 51 11.857 -7.523 12.233 1.00 53.53 0.009 C + ATOM 22 N THR A 52 10.527 -5.061 16.117 1.00 55.68 -0.344 N + ATOM 23 HN THR A 52 10.475 -6.064 15.941 1.00 0.00 0.163 HD + ]]></help> + <citations> + <citation type="doi">10.1002/jcc.21334</citation> + </citations> +</tool> |
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| diff -r 000000000000 -r d15e5a2a7558 test-data/3u1i_for_DM.pdb --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/3u1i_for_DM.pdb Sat Jun 04 12:37:59 2016 -0400 |
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| b'@@ -0,0 +1,1627 @@\n+ATOM 1 C ACE A 49 7.007 -4.529 9.096 1.00 0.00 C \n+ATOM 2 O ACE A 49 7.822 -3.710 8.650 1.00 0.00 O \n+ATOM 3 CH3 ACE A 49 6.132 -5.342 8.166 1.00 0.00 C \n+ATOM 4 1HH3 ACE A 49 6.747 -5.942 7.510 1.00 0.00 H \n+ATOM 5 2HH3 ACE A 49 5.492 -5.996 8.739 1.00 0.00 H \n+ATOM 6 3HH3 ACE A 49 5.518 -4.686 7.568 1.00 0.00 H \n+ATOM 7 N ASP A 50 6.886 -4.713 10.549 1.00 65.94 N \n+ATOM 8 CA ASP A 50 7.845 -3.806 11.248 1.00 64.98 C \n+ATOM 9 C ASP A 50 8.508 -4.537 12.430 1.00 62.63 C \n+ATOM 10 O ASP A 50 7.898 -5.423 13.032 1.00 63.05 O \n+ATOM 11 CB ASP A 50 7.146 -2.511 11.685 1.00 66.87 C \n+ATOM 12 CG ASP A 50 8.017 -1.267 11.465 1.00 68.22 C \n+ATOM 13 OD1 ASP A 50 9.140 -1.204 12.030 1.00 67.77 O \n+ATOM 14 OD2 ASP A 50 7.570 -0.351 10.729 1.00 69.97 O1-\n+ATOM 15 N LEU A 51 9.760 -4.189 12.730 1.00 60.07 N \n+ATOM 16 CA LEU A 51 10.551 -4.934 13.712 1.00 57.24 C \n+ATOM 17 C LEU A 51 10.592 -4.245 15.069 1.00 56.84 C \n+ATOM 18 O LEU A 51 10.689 -3.020 15.157 1.00 57.09 O \n+ATOM 19 CB LEU A 51 11.979 -5.179 13.205 1.00 55.78 C \n+ATOM 20 CG LEU A 51 12.250 -6.074 11.987 1.00 54.47 C \n+ATOM 21 CD1 LEU A 51 13.717 -6.000 11.623 1.00 52.72 C \n+ATOM 22 CD2 LEU A 51 11.857 -7.523 12.233 1.00 53.53 C \n+ATOM 23 N THR A 52 10.527 -5.061 16.117 1.00 55.68 N \n+ATOM 24 CA THR A 52 10.525 -4.607 17.507 1.00 55.35 C \n+ATOM 25 C THR A 52 11.729 -5.165 18.262 1.00 53.35 C \n+ATOM 26 O THR A 52 12.413 -6.076 17.786 1.00 52.40 O \n+ATOM 27 CB THR A 52 9.185 -4.964 18.195 1.00 56.95 C \n+ATOM 28 CG2 THR A 52 9.344 -5.211 19.697 1.00 57.60 C \n+ATOM 29 OG1 THR A 52 8.263 -3.881 18.000 1.00 59.52 O \n+ATOM 30 N VAL A 53 11.995 -4.605 19.433 1.00 52.78 N \n+ATOM 31 CA VAL A 53 13.184 -4.932 20.191 1.00 50.89 C \n+ATOM 32 C VAL A 53 12.790 -5.088 21.663 1.00 51.45 C \n+ATOM 33 O VAL A 53 12.137 -4.217 22.224 1.00 52.72 O \n+ATOM 34 CB VAL A 53 14.252 -3.824 19.943 1.00 50.64 C \n+ATOM 35 CG1 VAL A 53 15.024 -3.484 21.172 1.00 51.07 C \n+ATOM 36 CG2 VAL A 53 15.176 -4.211 18.809 1.00 48.66 C \n+ATOM 37 N GLU A 54 13.149 -6.211 22.281 1.00 50.29 N \n+ATOM 38 CA GLU A 54 12.846 -6.399 23.696 1.00 50.84 C \n+ATOM 39 C GLU A 54 14.024 -6.935 24.512 1.00 49.31 C \n+ATOM 40 O GLU A 54 14.646 -7.934 24.159 1.00 47.75 O \n+ATOM 41 CB GLU A 54 11.551 -7.200 23.896 1.00 51.87 C \n+ATOM 42 CG GLU A 54 11.689 -8.703 23.982 1.00 53.50 C \n+ATOM 43 CD GLU A 54 10.417 -9.381 24.495 1.00 58.29 C \n+ATOM 44 OE1 GLU A 54 10.519 -10.418 25.200 1.00 59.29 O \n+ATOM 45 OE2 GLU A 54 9.313 -8.875 24.194 1.00 60.50 O1-\n+ATOM 46 N LYS A 55 14.318 -6.231 25.596 1.00 49.81 N \n+ATOM 47 CA LYS A 55 15.435 -6.521 26.496 1.00 49.61 C \n+ATOM 48 C LYS A 55 15.433 -7.962 27.023 1.00 49.10 C \n+ATOM 49 O LYS A 55 14.388 -8.'..b'66 31.761 -12.886 14.194 1.00 0.00 N \n+ATOM 1580 CA ALA B 166 31.563 -11.731 13.318 1.00 0.00 C \n+ATOM 1581 C ALA B 166 31.911 -10.421 14.039 1.00 0.00 C \n+ATOM 1582 O ALA B 166 31.257 -10.037 15.004 1.00 0.00 O \n+ATOM 1583 CB ALA B 166 30.143 -11.702 12.741 1.00 0.00 C \n+ATOM 1584 N GLN B 167 32.973 -9.770 13.581 1.00 0.00 N \n+ATOM 1585 CA GLN B 167 33.446 -8.519 14.183 1.00 0.00 C \n+ATOM 1586 C GLN B 167 34.026 -7.589 13.104 1.00 0.00 C \n+ATOM 1587 O GLN B 167 34.456 -8.043 12.045 1.00 0.00 O \n+ATOM 1588 CB GLN B 167 34.484 -8.808 15.290 1.00 0.00 C \n+ATOM 1589 CG GLN B 167 35.004 -7.601 16.100 1.00 0.00 C \n+ATOM 1590 CD GLN B 167 33.909 -6.792 16.790 1.00 0.00 C \n+ATOM 1591 NE2 GLN B 167 33.973 -6.703 18.110 1.00 0.00 N \n+ATOM 1592 OE1 GLN B 167 33.040 -6.225 16.133 1.00 0.00 O \n+ATOM 1593 N THR B 168 34.015 -6.290 13.364 1.00 0.00 N \n+ATOM 1594 CA THR B 168 34.654 -5.359 12.444 1.00 0.00 C \n+ATOM 1595 C THR B 168 35.857 -4.704 13.134 1.00 0.00 C \n+ATOM 1596 O THR B 168 36.723 -5.414 13.684 1.00 0.00 O \n+ATOM 1597 CB THR B 168 33.629 -4.361 11.810 1.00 0.00 C \n+ATOM 1598 CG2 THR B 168 33.078 -3.401 12.818 1.00 0.00 C \n+ATOM 1599 OG1 THR B 168 34.256 -3.632 10.746 1.00 0.00 O \n+ATOM 1600 N ASN B 169 35.919 -3.372 13.074 1.00 0.00 N \n+ATOM 1601 CA ASN B 169 36.844 -2.529 13.854 1.00 0.00 C \n+ATOM 1602 C ASN B 169 36.139 -1.192 14.133 1.00 0.00 C \n+ATOM 1603 O ASN B 169 35.816 -0.463 13.194 1.00 0.00 O \n+ATOM 1604 CB ASN B 169 38.168 -2.317 13.105 1.00 0.00 C \n+ATOM 1605 CG ASN B 169 38.987 -3.594 13.003 1.00 0.00 C \n+ATOM 1606 ND2 ASN B 169 38.679 -4.424 12.011 1.00 0.00 N \n+ATOM 1607 OD1 ASN B 169 39.864 -3.844 13.828 1.00 0.00 O \n+ATOM 1608 N ALA B 170 35.899 -0.889 15.413 1.00 0.00 N \n+ATOM 1609 CA ALA B 170 34.911 0.134 15.837 1.00 0.00 C \n+ATOM 1610 C ALA B 170 35.224 1.605 15.513 1.00 0.00 C \n+ATOM 1611 O ALA B 170 36.387 2.020 15.549 1.00 0.00 O \n+ATOM 1612 CB ALA B 170 34.616 -0.011 17.325 1.00 0.00 C \n+ATOM 1613 N GLU B 171 34.163 2.374 15.226 1.00 0.00 N \n+ATOM 1614 CA GLU B 171 34.214 3.825 14.927 1.00 0.00 C \n+ATOM 1615 C GLU B 171 34.565 4.100 13.458 1.00 0.00 C \n+ATOM 1616 O GLU B 171 35.734 4.246 13.088 1.00 0.00 O \n+ATOM 1617 CB GLU B 171 35.138 4.591 15.908 1.00 0.00 C \n+ATOM 1618 CG GLU B 171 35.404 6.082 15.578 1.00 0.00 C \n+ATOM 1619 CD GLU B 171 34.361 7.046 16.155 1.00 0.00 C \n+ATOM 1620 OE1 GLU B 171 33.447 6.594 16.887 1.00 0.00 O \n+ATOM 1621 OE2 GLU B 171 34.463 8.263 15.878 1.00 0.00 O1- \n+ATOM 1623 N NME B 172 33.642 3.039 13.031 1.00 0.00 N \n+ATOM 1624 CH3 NME B 172 33.700 2.990 11.580 1.00 0.00 C \n+ATOM 1625 H NME B 172 33.064 2.445 13.643 1.00 0.00 H \n+ATOM 1626 1HH3 NME B 172 34.021 3.944 11.191 1.00 0.00 H \n+ATOM 1627 2HH3 NME B 172 34.400 2.229 11.264 1.00 0.00 H \n+ATOM 1628 3HH3 NME B 172 32.724 2.757 11.179 1.00 0.00 H \n+END\n' |
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| diff -r 000000000000 -r d15e5a2a7558 test-data/3u1i_for_DM.pdbqt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/3u1i_for_DM.pdbqt Sat Jun 04 12:37:59 2016 -0400 |
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| b'@@ -0,0 +1,1983 @@\n+ATOM 1 C ACE A 49 7.007 -4.529 9.096 1.00 0.00 0.214 C \n+ATOM 2 O ACE A 49 7.822 -3.710 8.650 1.00 0.00 -0.274 OA\n+ATOM 3 CH3 ACE A 49 6.132 -5.342 8.166 1.00 0.00 0.117 C \n+ATOM 4 N ASP A 50 6.886 -4.713 10.549 1.00 65.94 -0.348 N \n+ATOM 5 HN ASP A 50 6.246 -5.360 11.009 1.00 0.00 0.163 HD\n+ATOM 6 CA ASP A 50 7.845 -3.806 11.248 1.00 64.98 0.186 C \n+ATOM 7 C ASP A 50 8.508 -4.537 12.430 1.00 62.63 0.241 C \n+ATOM 8 O ASP A 50 7.898 -5.423 13.032 1.00 63.05 -0.271 OA\n+ATOM 9 CB ASP A 50 7.146 -2.511 11.685 1.00 66.87 0.147 C \n+ATOM 10 CG ASP A 50 8.017 -1.267 11.465 1.00 68.22 0.175 C \n+ATOM 11 OD1 ASP A 50 9.140 -1.204 12.030 1.00 67.77 -0.648 OA\n+ATOM 12 OD2 ASP A 50 7.570 -0.351 10.729 1.00 69.97 -0.648 OA\n+ATOM 13 N LEU A 51 9.760 -4.189 12.730 1.00 60.07 -0.346 N \n+ATOM 14 HN LEU A 51 10.177 -3.384 12.264 1.00 0.00 0.163 HD\n+ATOM 15 CA LEU A 51 10.551 -4.934 13.712 1.00 57.24 0.177 C \n+ATOM 16 C LEU A 51 10.592 -4.245 15.069 1.00 56.84 0.241 C \n+ATOM 17 O LEU A 51 10.689 -3.020 15.157 1.00 57.09 -0.271 OA\n+ATOM 18 CB LEU A 51 11.979 -5.179 13.205 1.00 55.78 0.038 C \n+ATOM 19 CG LEU A 51 12.250 -6.074 11.987 1.00 54.47 -0.020 C \n+ATOM 20 CD1 LEU A 51 13.717 -6.000 11.623 1.00 52.72 0.009 C \n+ATOM 21 CD2 LEU A 51 11.857 -7.523 12.233 1.00 53.53 0.009 C \n+ATOM 22 N THR A 52 10.527 -5.061 16.117 1.00 55.68 -0.344 N \n+ATOM 23 HN THR A 52 10.475 -6.064 15.941 1.00 0.00 0.163 HD\n+ATOM 24 CA THR A 52 10.525 -4.607 17.507 1.00 55.35 0.205 C \n+ATOM 25 C THR A 52 11.729 -5.165 18.262 1.00 53.35 0.243 C \n+ATOM 26 O THR A 52 12.413 -6.076 17.786 1.00 52.40 -0.271 OA\n+ATOM 27 CB THR A 52 9.185 -4.964 18.195 1.00 56.95 0.146 C \n+ATOM 28 CG2 THR A 52 9.344 -5.211 19.697 1.00 57.60 0.042 C \n+ATOM 29 OG1 THR A 52 8.263 -3.881 18.000 1.00 59.52 -0.393 OA\n+ATOM 30 HG1 THR A 52 7.441 -4.100 18.422 1.00 0.00 0.210 HD\n+ATOM 31 N VAL A 53 11.995 -4.605 19.433 1.00 52.78 -0.346 N \n+ATOM 32 HN VAL A 53 11.340 -3.921 19.813 1.00 0.00 0.163 HD\n+ATOM 33 CA VAL A 53 13.184 -4.932 20.191 1.00 50.89 0.180 C \n+ATOM 34 C VAL A 53 12.790 -5.088 21.663 1.00 51.45 0.241 C \n+ATOM 35 O VAL A 53 12.137 -4.217 22.224 1.00 52.72 -0.271 OA\n+ATOM 36 CB VAL A 53 14.252 -3.824 19.943 1.00 50.64 0.009 C \n+ATOM 37 CG1 VAL A 53 15.024 -3.484 21.172 1.00 51.07 0.012 C \n+ATOM 38 CG2 VAL A 53 15.176 -4.211 18.809 1.00 48.66 0.012 C \n+ATOM 39 N GLU A 54 13.149 -6.211 22.281 1.00 50.29 -0.346 N \n+ATOM 40 HN GLU A 54 13.637 -6.942 21.764 1.00 0.00 0.163 HD\n+ATOM 41 CA GLU A 54 12.846 -6.399 23.696 1.00 50.84 0.177 C \n+ATOM 42 C GLU A 54 14.024 -6.935 24.512 1.00 49.31 0.241 C \n+ATOM 43 O GLU A 54 14.646 -7.934 24.159 1.00 47.75 -0.271 OA\n+ATOM 44 CB GLU A 54 11.551 -7.200 23.896 1.00 51.87 0.045 C \n+ATOM 45 CG GLU A 54 11.689 -8.703 23.982 1.00 53.50 0.116 C \n+ATOM 46 CD GLU A 54 10.417 -9.381 24.495 1.00 58.29 0.172 C \n+ATOM 47 OE1 GLU A 54 10.519 -10.418 25.200 1.00 59.29 -0.648 OA\n+ATOM 48 OE2 GLU A 54 9.313 -8.875 24.194 1.00 60.50 -0.648 OA\n+ATOM 49 N LYS A 55 14.318 -6.231 25.596 1.00 49.81 -0.346 N \n+ATOM 5'..b'\n+ATOM 1933 CA GLN B 167 33.446 -8.519 14.183 1.00 0.00 0.177 C \n+ATOM 1934 C GLN B 167 34.026 -7.589 13.104 1.00 0.00 0.241 C \n+ATOM 1935 O GLN B 167 34.456 -8.043 12.045 1.00 0.00 -0.271 OA\n+ATOM 1936 CB GLN B 167 34.484 -8.808 15.290 1.00 0.00 0.044 C \n+ATOM 1937 CG GLN B 167 35.004 -7.601 16.100 1.00 0.00 0.105 C \n+ATOM 1938 CD GLN B 167 33.909 -6.792 16.790 1.00 0.00 0.215 C \n+ATOM 1939 NE2 GLN B 167 33.973 -6.703 18.110 1.00 0.00 -0.370 N \n+ATOM 1940 1HE2 GLN B 167 33.241 -6.162 18.571 1.00 0.00 0.159 HD\n+ATOM 1941 2HE2 GLN B 167 34.695 -7.174 18.656 1.00 0.00 0.159 HD\n+ATOM 1942 OE1 GLN B 167 33.040 -6.225 16.133 1.00 0.00 -0.274 OA\n+ATOM 1943 N THR B 168 34.015 -6.290 13.364 1.00 0.00 -0.344 N \n+ATOM 1944 HN THR B 168 33.559 -5.942 14.208 1.00 0.00 0.163 HD\n+ATOM 1945 CA THR B 168 34.654 -5.359 12.444 1.00 0.00 0.205 C \n+ATOM 1946 C THR B 168 35.857 -4.704 13.134 1.00 0.00 0.243 C \n+ATOM 1947 O THR B 168 36.723 -5.414 13.684 1.00 0.00 -0.271 OA\n+ATOM 1948 CB THR B 168 33.629 -4.361 11.810 1.00 0.00 0.146 C \n+ATOM 1949 CG2 THR B 168 33.078 -3.401 12.818 1.00 0.00 0.042 C \n+ATOM 1950 OG1 THR B 168 34.256 -3.632 10.746 1.00 0.00 -0.393 OA\n+ATOM 1951 HG1 THR B 168 33.634 -3.026 10.361 1.00 0.00 0.210 HD\n+ATOM 1952 N ASN B 169 35.919 -3.372 13.074 1.00 0.00 -0.345 N \n+ATOM 1953 HN ASN B 169 35.276 -2.900 12.438 1.00 0.00 0.163 HD\n+ATOM 1954 CA ASN B 169 36.844 -2.529 13.854 1.00 0.00 0.185 C \n+ATOM 1955 C ASN B 169 36.139 -1.192 14.133 1.00 0.00 0.241 C \n+ATOM 1956 O ASN B 169 35.816 -0.463 13.194 1.00 0.00 -0.271 OA\n+ATOM 1957 CB ASN B 169 38.168 -2.317 13.105 1.00 0.00 0.137 C \n+ATOM 1958 CG ASN B 169 38.987 -3.594 13.003 1.00 0.00 0.217 C \n+ATOM 1959 ND2 ASN B 169 38.679 -4.424 12.011 1.00 0.00 -0.370 N \n+ATOM 1960 1HD2 ASN B 169 37.952 -4.217 11.327 1.00 0.00 0.159 HD\n+ATOM 1961 2HD2 ASN B 169 39.228 -5.281 11.943 1.00 0.00 0.159 HD\n+ATOM 1962 OD1 ASN B 169 39.864 -3.844 13.828 1.00 0.00 -0.274 OA\n+ATOM 1963 N ALA B 170 35.899 -0.889 15.413 1.00 0.00 -0.346 N \n+ATOM 1964 HN ALA B 170 36.421 -1.386 16.134 1.00 0.00 0.163 HD\n+ATOM 1965 CA ALA B 170 34.911 0.134 15.837 1.00 0.00 0.172 C \n+ATOM 1966 C ALA B 170 35.224 1.605 15.513 1.00 0.00 0.240 C \n+ATOM 1967 O ALA B 170 36.387 2.020 15.549 1.00 0.00 -0.271 OA\n+ATOM 1968 CB ALA B 170 34.616 -0.011 17.325 1.00 0.00 0.042 C \n+ATOM 1969 N GLU B 171 34.163 2.374 15.226 1.00 0.00 -0.346 N \n+ATOM 1970 HN GLU B 171 33.248 1.924 15.212 1.00 0.00 0.163 HD\n+ATOM 1971 CA GLU B 171 34.214 3.825 14.927 1.00 0.00 0.177 C \n+ATOM 1972 C GLU B 171 34.565 4.100 13.458 1.00 0.00 0.240 C \n+ATOM 1973 O GLU B 171 35.734 4.246 13.088 1.00 0.00 -0.271 OA\n+ATOM 1974 CB GLU B 171 35.138 4.591 15.908 1.00 0.00 0.045 C \n+ATOM 1975 CG GLU B 171 35.404 6.082 15.578 1.00 0.00 0.116 C \n+ATOM 1976 CD GLU B 171 34.361 7.046 16.155 1.00 0.00 0.172 C \n+ATOM 1977 OE1 GLU B 171 33.447 6.594 16.887 1.00 0.00 -0.648 OA\n+ATOM 1978 OE2 GLU B 171 34.463 8.263 15.878 1.00 0.00 -0.648 OA\n+ATOM 1979 N NME B 172 33.642 3.039 13.031 1.00 0.00 -0.364 N \n+ATOM 1980 CH3 NME B 172 33.700 2.990 11.580 1.00 0.00 0.149 C \n+ATOM 1981 H NME B 172 33.064 2.445 13.643 1.00 0.00 0.161 HD\n+TER 1982 NME B 172 \n' |