| Previous changeset 0:ca8f63f2f7d4 (2014-11-21) Next changeset 2:7254ece0c0ff (2017-05-11) |
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Commit message:
Uploaded v0.0.1b with warning about samtools 8000 coverage limit |
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modified:
tools/coverage_stats/coverage_stats.xml |
| b |
| diff -r ca8f63f2f7d4 -r d1fdfaae5dbe tools/coverage_stats/coverage_stats.xml --- a/tools/coverage_stats/coverage_stats.xml Fri Nov 21 09:28:29 2014 -0500 +++ b/tools/coverage_stats/coverage_stats.xml Fri Nov 21 09:43:58 2014 -0500 |
| b |
| @@ -75,6 +75,12 @@ plus the final row (labelled with an asterisk) representing 950320 unmapped reads. In this BAM file, the fourth column was otherwise zero. +.. class:: warningmark + +**Note**. There is an internal hard limit of 8000 for the pileup routine in +samtools, meaning the reported coverage from ``samtools depth`` will show +maximum coverage depths *around* 8000. + **Citation** |