| Previous changeset 4:6106d14aabd1 (2024-06-03) |
|
Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 5f71b597c9495eae67a447744fded834f56ca1f7 |
|
modified:
qiime2__phylogeny__filter_tree.xml test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza |
| b |
| diff -r 6106d14aabd1 -r d24d147a225d qiime2__phylogeny__filter_tree.xml --- a/qiime2__phylogeny__filter_tree.xml Mon Jun 03 23:30:05 2024 +0000 +++ b/qiime2__phylogeny__filter_tree.xml Wed Oct 30 19:53:52 2024 +0000 |
| [ |
| @@ -6,14 +6,17 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2024.5.0) + q2galaxy (version: 2024.10.0) for: - qiime2 (version: 2024.5.0) + qiime2 (version: 2024.10.1) --> -<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> <description>Remove features from tree based on metadata</description> + <xrefs> + <xref type="bio.tools">qiime2</xref> + </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2024.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.10</container> </requirements> <version_command>q2galaxy version phylogeny</version_command> <command detect_errors="exit_code">q2galaxy run phylogeny filter_tree '$inputs'</command> @@ -23,18 +26,18 @@ <inputs> <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted¹ | Unrooted²]" help="[required] Tree that should be filtered"> <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="Phylogeny[Unrooted]"/> <filter type="add_value" value="Phylogeny[Rooted]"/> - <filter type="add_value" value="Phylogeny[Unrooted]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator> </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table which contains the identifier that should be retained in the tree"> <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> - <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> + <filter type="add_value" value="FeatureTable[Composition]"/> <filter type="add_value" value="FeatureTable[Frequency]"/> - <filter type="add_value" value="FeatureTable[Composition]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> </param> |
| b |
| diff -r 6106d14aabd1 -r d24d147a225d test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza |
| b |
| Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed |