| Previous changeset 2:6184cfc70e28 (2021-01-22) Next changeset 4:74f9f312c713 (2022-06-27) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d76130cdcb21f0390b4e68e733d38575fd5cc6c7" |
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modified:
filter.xml macros.xml |
| b |
| diff -r 6184cfc70e28 -r d2590fe6793f filter.xml --- a/filter.xml Fri Jan 22 14:32:03 2021 +0000 +++ b/filter.xml Tue Dec 14 19:06:53 2021 +0000 |
| b |
| @@ -1,6 +1,7 @@ <?xml version="1.0"?> <tool id="delly_filter" name="Delly filter" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="18.01"> <description>somatic or germline structural variants</description> + <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> @@ -231,7 +232,7 @@ </output> <output name="out_vcf"> <assert_contents> - <has_n_lines n="142"/> + <has_n_lines n="143"/> <has_line line="##fileformat=VCFv4.2"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOR"/> </assert_contents> |
| b |
| diff -r 6184cfc70e28 -r d2590fe6793f macros.xml --- a/macros.xml Fri Jan 22 14:32:03 2021 +0000 +++ b/macros.xml Tue Dec 14 19:06:53 2021 +0000 |
| [ |
| @@ -1,11 +1,11 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">0.8.7</token> + <token name="@TOOL_VERSION@">0.9.1</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">delly</requirement> - <requirement type="package" version="1.10.2">bcftools</requirement> + <requirement type="package" version="1.12">bcftools</requirement> </requirements> </xml> <xml name="version_command"> @@ -16,7 +16,11 @@ <citation type="doi">10.1093/bioinformatics/bts378</citation> </citations> </xml> - + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">delly2</xref> + </xrefs> + </xml> <!-- command --> <token name="@BAM@"><![CDATA[ @@ -148,4 +152,4 @@ <token name="@REFERENCES@"><![CDATA[ More information are available on `GitHub <https://github.com/dellytools/delly>`_. ]]></token> -</macros> \ No newline at end of file +</macros> |