| Previous changeset 1:8671cf7c1671 (2023-10-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery2 commit 22916ed24dfb8452c8142e5d6b282d0e931af91f |
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modified:
macros.xml pepquery2_show_sets.xml |
| b |
| diff -r 8671cf7c1671 -r d39a43a076fc macros.xml --- a/macros.xml Wed Oct 18 06:40:48 2023 +0000 +++ b/macros.xml Wed May 08 17:12:13 2024 +0000 |
| [ |
| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">2.0.2</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <xml name="citations"> <citations> <citation type="doi">10.1101/gr.235028.118</citation> @@ -20,7 +20,7 @@ #end if #end def #def clean($name1) - #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fas|fasta|imzml|mzml|mzxml|mgf|raw)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) + #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fas|fasta|imzml|mzml|mzxml|mgf)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) #return $name_clean #end def #def ln_name($ds) @@ -31,8 +31,6 @@ #set $ext = ".mzXML" #else if $ds.is_of_type('mgf') #set $ext = ".mgf" - #else if $ds.is_of_type('thermo.raw') - #set $ext = ".raw" #else if $ds.is_of_type('fasta') #set $ext = ".fasta" #end if |
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| diff -r 8671cf7c1671 -r d39a43a076fc pepquery2_show_sets.xml --- a/pepquery2_show_sets.xml Wed Oct 18 06:40:48 2023 +0000 +++ b/pepquery2_show_sets.xml Wed May 08 17:12:13 2024 +0000 |
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| @@ -45,7 +45,7 @@ </data> </outputs> <tests> - <test> + <test expect_num_outputs="1"> <output name="pepquerydb"> <assert_contents> <has_text text="CPTAC_PDA_Discovery_Study_Proteome_PDC000270" /> |