Repository 'ucsc_fasplit'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit

Changeset 3:d3f58a0dc09d (2024-09-22)
Previous changeset 2:bf04bd405d5b (2022-02-02)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fasplit commit 303002db06287fb25306020c4391626842f52162
modified:
fasplit.xml
b
diff -r bf04bd405d5b -r d3f58a0dc09d fasplit.xml
--- a/fasplit.xml Wed Feb 02 13:56:02 2022 +0000
+++ b/fasplit.xml Sun Sep 22 07:26:24 2024 +0000
[
b'@@ -1,11 +1,11 @@\n-<tool id="fasplit" name="faSplit" version="@TOOL_VERSION@">\n+<tool id="fasplit" name="faSplit" version="@TOOL_VERSION@" profile="22.05">\n     <description>Split a FASTA file</description>\n+    <macros>\n+        <token name="@TOOL_VERSION@">469</token>\n+    </macros>\n     <xrefs>\n         <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>\n     </xrefs>\n-    <macros>\n-        <token name="@TOOL_VERSION@">377</token>\n-    </macros>\n     <requirements>\n         <requirement type="package" version="@TOOL_VERSION@">ucsc-fasplit</requirement>\n     </requirements>\n@@ -57,52 +57,52 @@\n                 <element name="2" file="2.fa" />\n                 <element name="3" file="3.fa" />\n                 <element name="4" file="4.fa" />\n-            </output_collection>    \n+            </output_collection>\n         </test>\n         <test>\n             <param name="input" ftype="fasta" value="CDS.fa"/>\n             <param name="split_type" value="byname"/>\n             <output_collection name="output_list" type="list">\n                 <element name="ENSCAFT00000022939_canisfamiliaris" file="ENSCAFT00000022939_canisfamiliaris.fa" />\n+                <element name="ENSCAFT00000022963_canisfamiliaris" file="ENSCAFT00000022963_canisfamiliaris.fa" />\n+                <element name="ENSCAFT00000025950_canisfamiliaris" file="ENSCAFT00000025950_canisfamiliaris.fa" />\n+                <element name="ENSMUST00000026013_musmusculus" file="ENSMUST00000026013_musmusculus.fa" />\n+                <element name="ENSMUST00000040820_musmusculus" file="ENSMUST00000040820_musmusculus.fa" />\n+                <element name="ENSMUST00000041588_musmusculus" file="ENSMUST00000041588_musmusculus.fa" />\n+                <element name="ENSMUST00000091291_musmusculus" file="ENSMUST00000091291_musmusculus.fa" />\n+                <element name="ENSMUST00000100505_musmusculus" file="ENSMUST00000100505_musmusculus.fa" />\n+                <element name="ENSMUST00000110806_musmusculus" file="ENSMUST00000110806_musmusculus.fa" />\n+                <element name="ENSMUST00000153440_musmusculus" file="ENSMUST00000153440_musmusculus.fa" />\n+                <element name="ENSMUST00000163344_musmusculus" file="ENSMUST00000163344_musmusculus.fa" />\n+                <element name="ENSMUST00000168613_musmusculus" file="ENSMUST00000168613_musmusculus.fa" />\n+                <element name="ENSMUST00000173143_musmusculus" file="ENSMUST00000173143_musmusculus.fa" />\n                 <element name="ENSMUST00000207100_musmusculus" file="ENSMUST00000207100_musmusculus.fa" />\n-                <element name="ENSSSCT00000014817_susscrofa" file="ENSSSCT00000014817_susscrofa.fa" />\n-                <element name="ENSCAFT00000022963_canisfamiliaris" file="ENSCAFT00000022963_canisfamiliaris.fa" />\n                 <element name="ENSMUST00000208839_musmusculus" file="ENSMUST00000208839_musmusculus.fa" />\n-                <element name="ENSSSCT00000023183_susscrofa" file="ENSSSCT00000023183_susscrofa.fa" />\n-                <element name="ENSCAFT00000025950_canisfamiliaris" file="ENSCAFT00000025950_canisfamiliaris.fa" />\n                 <element name="ENSPTRT00000019089_pantroglodytes" file="ENSPTRT00000019089_pantroglodytes.fa" />\n-                <element name="ENSSSCT00000032764_susscrofa" file="ENSSSCT00000032764_susscrofa.fa" />\n-                <element name="ENSMUST00000026013_musmusculus" file="ENSMUST00000026013_musmusculus.fa" />\n                 <element name="ENSPTRT00000034846_pantroglodytes" file="ENSPTRT00000034846_pantroglodytes.fa" />\n+                <element name="ENSPTRT00000040520_pantroglodytes" file="ENSPTRT00000040520_pantroglodytes.fa" />\n+                <element name="ENSPTRT00000040521_pantroglodytes" file="ENSPTRT00000040521_pantroglodytes.fa" />\n+                <element name="ENSRNOT00000041155_rattusnorvegicus" file="ENSRNOT00000041155_rattusnorvegicus.fa" />\n+                <element name="ENSRNOT00000044009_rattusnorvegicus" file="ENSRN'..b'element name="ENSSSCT00000013404_susscrofa" file="ENSSSCT00000013404_susscrofa.fa" />\n+                <element name="ENSSSCT00000014817_susscrofa" file="ENSSSCT00000014817_susscrofa.fa" />\n+                <element name="ENSSSCT00000023183_susscrofa" file="ENSSSCT00000023183_susscrofa.fa" />\n+                <element name="ENSSSCT00000032764_susscrofa" file="ENSSSCT00000032764_susscrofa.fa" />\n                 <element name="ENSSSCT00000033745_susscrofa" file="ENSSSCT00000033745_susscrofa.fa" />\n-                <element name="ENSMUST00000040820_musmusculus" file="ENSMUST00000040820_musmusculus.fa" />\n-                <element name="ENSPTRT00000040520_pantroglodytes" file="ENSPTRT00000040520_pantroglodytes.fa" />\n                 <element name="ENSSSCT00000035258_susscrofa" file="ENSSSCT00000035258_susscrofa.fa" />\n-                <element name="ENSMUST00000041588_musmusculus" file="ENSMUST00000041588_musmusculus.fa" />\n-                <element name="ENSPTRT00000040521_pantroglodytes" file="ENSPTRT00000040521_pantroglodytes.fa" />\n                 <element name="ENST00000302850_homosapiens" file="ENST00000302850_homosapiens.fa" />\n-                <element name="ENSMUST00000091291_musmusculus" file="ENSMUST00000091291_musmusculus.fa" />\n-                <element name="ENSRNOT00000041155_rattusnorvegicus" file="ENSRNOT00000041155_rattusnorvegicus.fa" />\n                 <element name="ENST00000338702_homosapiens" file="ENST00000338702_homosapiens.fa" />\n-                <element name="ENSMUST00000100505_musmusculus" file="ENSMUST00000100505_musmusculus.fa" />\n-                <element name="ENSRNOT00000044009_rattusnorvegicus" file="ENSRNOT00000044009_rattusnorvegicus.fa" />\n                 <element name="ENST00000340611_homosapiens" file="ENST00000340611_homosapiens.fa" />\n-                <element name="ENSMUST00000110806_musmusculus" file="ENSMUST00000110806_musmusculus.fa" />\n-                <element name="ENSRNOT00000064726_rattusnorvegicus" file="ENSRNOT00000064726_rattusnorvegicus.fa" />\n                 <element name="ENST00000341500_homosapiens" file="ENST00000341500_homosapiens.fa" />\n-                <element name="ENSMUST00000153440_musmusculus" file="ENSMUST00000153440_musmusculus.fa" />\n-                <element name="ENSRNOT00000066674_rattusnorvegicus" file="ENSRNOT00000066674_rattusnorvegicus.fa" />\n                 <element name="ENST00000378069_homosapiens" file="ENST00000378069_homosapiens.fa" />\n-                <element name="ENSMUST00000163344_musmusculus" file="ENSMUST00000163344_musmusculus.fa" />\n-                <element name="ENSRNOT00000067448_rattusnorvegicus" file="ENSRNOT00000067448_rattusnorvegicus.fa" />\n                 <element name="ENST00000421712_homosapiens" file="ENST00000421712_homosapiens.fa" />\n-                <element name="ENSMUST00000168613_musmusculus" file="ENSMUST00000168613_musmusculus.fa" />\n-                <element name="ENSSSCT00000008295_susscrofa" file="ENSSSCT00000008295_susscrofa.fa" />\n                 <element name="ENST00000542639_homosapiens" file="ENST00000542639_homosapiens.fa" />\n-                <element name="ENSMUST00000173143_musmusculus" file="ENSMUST00000173143_musmusculus.fa" />\n-                <element name="ENSSSCT00000013404_susscrofa" file="ENSSSCT00000013404_susscrofa.fa" />\n                 <element name="ENST00000600492_homosapiens" file="ENST00000600492_homosapiens.fa" />\n-            </output_collection>    \n+            </output_collection>\n         </test>\n     </tests>\n     <help><![CDATA[\n@@ -110,8 +110,12 @@\n \n `faSplit`_ is a tool to split a single FASTA file into several files.\n \n+For implementation details see faSplit\'s `source code`_.\n+\n .. _faSplit: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt\n+.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/utils/faSplit/faSplit.c\n     ]]></help>\n     <citations>\n+        <citation type="doi">10.1093/bib/bbs038</citation>\n     </citations>\n </tool>\n'