| Previous changeset 3:a54d1ecdf5b3 (2017-08-08) Next changeset 5:a73c2e65098e (2017-08-25) |
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Commit message:
Uploaded |
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modified:
gene_family_aligner.xml macros.xml |
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added:
.shed.yml |
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| diff -r a54d1ecdf5b3 -r d3f8c8b77dbe .shed.yml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/.shed.yml Thu Aug 24 13:18:06 2017 -0400 |
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| @@ -0,0 +1,13 @@ +name: plant_tribes_gene_family_aligner +owner: greg +description: | + Contains a tool that integrates de novo assembly sequences with scaffold gene family sequences. +homepage_url: https://github.com/dePamphilis/PlantTribes +long_description: | + Contains a tool that tool is one of the PlantTribes collection of automated modular analysis pipelines that + utilize objective classifications of complete protein sequences from sequenced plant genomes to perform + comparative evolutionary studies. This tool aligns gene family sequences. +remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/plant_tribes/gene_family_aligner +type: unrestricted +categories: +- Phylogenetics |
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| diff -r a54d1ecdf5b3 -r d3f8c8b77dbe gene_family_aligner.xml --- a/gene_family_aligner.xml Tue Aug 08 13:35:50 2017 -0400 +++ b/gene_family_aligner.xml Thu Aug 24 13:18:06 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="plant_tribes_gene_family_aligner" name="GeneFamilyAligner" version="@WRAPPER_VERSION@.0"> +<tool id="plant_tribes_gene_family_aligner" name="GeneFamilyAligner" version="@WRAPPER_VERSION@.2"> <description>aligns integrated orthologous gene family clusters</description> <macros> <import>macros.xml</import> |
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| diff -r a54d1ecdf5b3 -r d3f8c8b77dbe macros.xml --- a/macros.xml Tue Aug 08 13:35:50 2017 -0400 +++ b/macros.xml Thu Aug 24 13:18:06 2017 -0400 |
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| @@ -3,37 +3,37 @@ <token name="@WRAPPER_VERSION@">1.0</token> <xml name="requirements_assembly_post_processor"> <requirements> - <requirement type="package" version="1.0.0">plant_tribes_assembly_post_processor</requirement> + <requirement type="package" version="1.0.2">plant_tribes_assembly_post_processor</requirement> </requirements> </xml> <xml name="requirements_gene_family_aligner"> <requirements> - <requirement type="package" version="1.0.0">plant_tribes_gene_family_aligner</requirement> + <requirement type="package" version="1.0.2">plant_tribes_gene_family_aligner</requirement> </requirements> </xml> <xml name="requirements_gene_family_classifier"> <requirements> - <requirement type="package" version="1.0.0">plant_tribes_gene_family_classifier</requirement> + <requirement type="package" version="1.0.2">plant_tribes_gene_family_classifier</requirement> </requirements> </xml> <xml name="requirements_gene_family_integrator"> <requirements> - <requirement type="package" version="1.0.0">plant_tribes_gene_family_integrator</requirement> + <requirement type="package" version="1.0.2">plant_tribes_gene_family_integrator</requirement> </requirements> </xml> <xml name="requirements_kaks_analysis"> <requirements> - <requirement type="package" version="1.0.0">plant_tribes_kaks_analysis</requirement> + <requirement type="package" version="1.0.2">plant_tribes_kaks_analysis</requirement> </requirements> </xml> <xml name="requirements_ks_distribution"> <requirements> - <requirement type="package" version="1.3.0">r-optparse</requirement> + <requirement type="package" version="1.3.2">r-optparse</requirement> </requirements> </xml> <xml name="requirements_gene_family_phylogeny_builder"> <requirements> - <requirement type="package" version="1.0.0">plant_tribes_gene_family_phylogeny_builder</requirement> + <requirement type="package" version="1.0.2">plant_tribes_gene_family_phylogeny_builder</requirement> </requirements> </xml> <xml name="param_codon_alignments"> |