| Previous changeset 5:5201ec38c01f (2020-12-28) Next changeset 7:7bac6f5fcfa2 (2021-06-22) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 6ba137e32243a6de1fb83a7d4b88f9283db5dd01" |
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modified:
maker.xml |
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added:
readme.rst |
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| diff -r 5201ec38c01f -r d46d803ca6cc maker.xml --- a/maker.xml Mon Dec 28 23:19:04 2020 +0000 +++ b/maker.xml Tue Jan 05 09:00:59 2021 +0000 |
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| @@ -39,9 +39,9 @@ export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && #end if - MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}" && - if [ "\$MAKER_NO_MPI" != "1" ]; then - MPI_CMD=""; + MPI_CMD="" && + if [ "\$MAKER_MPI" == "1" ]; then + MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}"; fi && \${MPI_CMD} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null |
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| diff -r 5201ec38c01f -r d46d803ca6cc readme.rst --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Tue Jan 05 09:00:59 2021 +0000 |
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| @@ -0,0 +1,7 @@ +Running with MPI +================ + +By default, Maker will only run on 1 cpu. If you want to parallelize on any number +of cpus and nodes, you can enable MPI by setting the ``MAKER_MPI`` variable to 1 +in the job destination, and setting ``GALAXY_SLOTS`` to the desired number of cores +(see https://galaxyproject.org/admin/config/galaxy_slots/#galaxy_slots-for-server-admins). |