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Uploaded 20170531 |
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loadandplot.xml plotwithscale.xml testandplot.xml |
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._ETn_example ._example ._loadandplot.R ._plotwithscale.R ._testandplot.R ETn_example/._.DS_Store ETn_example/._Control.bed ETn_example/._DESCRIPTION.txt ETn_example/._ETn_fixed.bed ETn_example/._Recombination_hotspots.txt ETn_example/._features.header ETn_example/._regions.header example/._.DS_Store example/._Controls_regions.bed example/._DESCRIPTION.txt example/._Elements1_regions.bed example/._Elements2_regions.bed example/._Elements3_regions.bed example/._Feature1.bed example/._Feature2.bed example/._features.header.bed.txt example/._regions.header.txt |
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| diff -r 3d2e03e9c526 -r d49031ef33d5 loadandplot.xml --- a/loadandplot.xml Wed May 31 15:26:42 2017 -0400 +++ b/loadandplot.xml Wed May 31 16:25:59 2017 -0400 |
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| @@ -290,12 +290,20 @@ **Notes** -This Galaxy tool has been developed by Fabio Cumbo (Third University of Rome, Italy) and Marzia A. Cremona (The Pennsylvania State University, USA). +This Galaxy tool has been developed by Fabio Cumbo (Third University of Rome, Italy - fabio.cumbo@iasi.cnr.it) and Marzia A. Cremona (The Pennsylvania State University, USA - mac78@psu.edu). It implements a simplified version of the methods *smooth* and *plot* for *IWTomicsData* objects. The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf + +Example data can be found at: + +1. Simulated_data_ +2. ETn_data_ + +.. _Simulated_data: https://usegalaxy.org/u/fabio-cumbo/h/iwtomics-example +.. _ETn_data: https://usegalaxy.org/u/fabio-cumbo/h/iwtomics-etn-example </help> <citations> @@ -316,7 +324,7 @@ iwtomics, author = {Cremona, Marzia A and Pini, Alessia and Chiaromonte, Francesca and Vantini, Simone}, title = {IWTomics: Interval-Wise Testing for Omics Data}, - note = {R package version 0.99.12}, + note = {R package version 1.0.0}, year = {2017} } </citation> |
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| diff -r 3d2e03e9c526 -r d49031ef33d5 plotwithscale.xml --- a/plotwithscale.xml Wed May 31 15:26:42 2017 -0400 +++ b/plotwithscale.xml Wed May 31 16:25:59 2017 -0400 |
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| @@ -192,7 +192,7 @@ iwtomics, author = {Cremona, Marzia A and Pini, Alessia and Chiaromonte, Francesca and Vantini, Simone}, title = {IWTomics: Interval-Wise Testing for Omics Data}, - note = {R package version 0.99.12}, + note = {R package version 1.0.0}, year = {2017} } </citation> |
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| diff -r 3d2e03e9c526 -r d49031ef33d5 testandplot.xml --- a/testandplot.xml Wed May 31 15:26:42 2017 -0400 +++ b/testandplot.xml Wed May 31 16:25:59 2017 -0400 |
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| @@ -230,7 +230,7 @@ iwtomics, author = {Cremona, Marzia A and Pini, Alessia and Chiaromonte, Francesca and Vantini, Simone}, title = {IWTomics: Interval-Wise Testing for Omics Data}, - note = {R package version 0.99.12}, + note = {R package version 1.0.0}, year = {2017} } </citation> |