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Commit message:
Uploaded |
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modified:
edgeR.xml |
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| diff -r e5fcbabbdea7 -r d49d06d35683 edgeR.xml --- a/edgeR.xml Wed Aug 21 22:13:03 2013 -0400 +++ b/edgeR.xml Wed Aug 21 22:13:23 2013 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="edgeR" name="edgeR" version="0.0.1"> +<tool id="edgeR" name="edgeR" version="0.0.2"> <description> - Estimates differential gene expression for short read sequence count using methods appropriate for count data</description> <requirements> <requirement type="R-module">edgeR</requirement> @@ -10,8 +10,7 @@ #if $analysis_type.analysis == "pw": -r $analysis_type.rowsumfilter #if $analysis_type.tagwise_disp.twd == "TRUE": - -p $analysis_type.tagwise_disp.twd_prop - -u $analysis_type.tagwise_disp.twd_trend + -u $analysis_type.tagwise_disp.twd_trend -t #end if ## GLM @@ -71,7 +70,6 @@ <option value="tricube">Tricube</option> <option value="none">None</option> </param> - <param name="twd_prop" type="float" value="0.3" label="The proportion of all tags/genes to be used for the locally weighted estimation of the tagwise dispersion, allowing the dispersion estimates to vary with abundance (expression level)"/> </when> </conditional> </when> |