| Previous changeset 11:091bb5922a82 (2024-02-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format commit 950bc3657a7bd6975337324bd0f1d0e5c0afc0f4 |
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modified:
biom_convert.xml macros.xml |
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| diff -r 091bb5922a82 -r d4d4e9febf5c biom_convert.xml --- a/biom_convert.xml Fri Feb 09 21:35:43 2024 +0000 +++ b/biom_convert.xml Fri Mar 15 15:26:20 2024 +0000 |
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| @@ -114,8 +114,8 @@ <data format="biom1" name="output_fp"> <change_format> <when input="output.type_selector" value="tsv" format="tabular" /> - <when input="output.biom_type" value="json" format="biom1" /> - <when input="output.biom_type" value="hdf5" format="biom2" /> + <when input="output.biom_type.selector" value="json" format="biom1" /> + <when input="output.biom_type.selector" value="hdf5" format="biom2" /> </change_format> </data> </outputs> @@ -132,14 +132,31 @@ <conditional name="biom_type"> <param name="selector" value="json"/> </conditional> - <param name="sample_metadata_fp"/> - <param name="observation_metadata_fp"/> </conditional> <output name="output_fp" file="output_taxonomy_1.biom1.re" ftype="biom1" compare="re_match"/> </test> <test> <conditional name="input"> <param name="type_selector" value="tsv"/> + <param name="input_fp" value="input_abundance_taxonomy_1.tabular" ftype="tabular"/> + <param name="process_obs_metadata" value="taxonomy"/> + </conditional> + <conditional name="output"> + <param name="type_selector" value="biom"/> + <param name="table_type" value="OTU table"/> + <conditional name="biom_type"> + <param name="selector" value="hdf5"/> + </conditional> + </conditional> + <output name="output_fp" ftype="biom2"> + <assert_contents> + <has_size value="37k" delta="10k"/> + </assert_contents> + </output> + </test> + <test> + <conditional name="input"> + <param name="type_selector" value="tsv"/> <param name="input_fp" value="input_abundance_1.tabular" ftype="tabular"/> <param name="process_obs_metadata" value=""/> </conditional> |
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| diff -r 091bb5922a82 -r d4d4e9febf5c macros.xml --- a/macros.xml Fri Feb 09 21:35:43 2024 +0000 +++ b/macros.xml Fri Mar 15 15:26:20 2024 +0000 |
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| @@ -6,7 +6,7 @@ </requirements> </xml> <token name="@TOOL_VERSION@">2.1.15</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">21.05</token> <xml name="bio_tools"> <xrefs> |