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Changeset 4:d51310ab328a (2024-04-24)

Previous changeset 3:6c4b22ef2b81 (2024-04-04)

Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_simple_filter/ commit c86a1b93cb7732f7331a981d13465653cc1a2790

modified:
filter.xml
filter_image.py

diff -r 6c4b22ef2b81 -r d51310ab328a filter.xml
--- a/filter.xml Thu Apr 04 15:23:42 2024 +0000
+++ b/filter.xml Wed Apr 24 08:12:03 2024 +0000

[

@@ -4,7 +4,7 @@
         <import>creators.xml</import>
         <import>tests.xml</import>
         <token name="@TOOL_VERSION@">1.12.0</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <creator>
         <expand macro="creators/bmcv" />
@@ -20,6 +20,7 @@
         <requirement type="package" version="1.26.4">numpy</requirement>
         <requirement type="package" version="0.22.0">scikit-image</requirement>
         <requirement type="package" version="2024.2.12">tifffile</requirement>
+        <requirement type="package" version="0.1">giatools</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[

diff -r 6c4b22ef2b81 -r d51310ab328a filter_image.py
--- a/filter_image.py Thu Apr 04 15:23:42 2024 +0000
+++ b/filter_image.py Wed Apr 24 08:12:03 2024 +0000

[

@@ -1,5 +1,6 @@
import argparse

+import giatools.io
import scipy.ndimage as ndi
import skimage.io
import skimage.util
@@ -23,6 +24,6 @@
     parser.add_argument('size', type=float, help='Size of the filter (e.g., radius, sigma)')
     args = parser.parse_args()

-    im = skimage.io.imread(args.input.name)
+    im = giatools.io.imread(args.input.name)
     res = filters[args.filter](im, args.size)
     skimage.io.imsave(args.output.name, res, plugin='tifffile')