Repository 'gff_to_prot'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot

Changeset 1:d605800d956c (2019-06-25)
Previous changeset 0:99810cf51f2e (2019-04-22) Next changeset 2:c1751dfb4d94 (2019-10-08)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 2281efd6260f058371013e21163fa5931de99080
modified:
macros.xml
test-data/hmm-sites1.txt
b
diff -r 99810cf51f2e -r d605800d956c macros.xml
--- a/macros.xml Mon Apr 22 14:42:21 2019 -0400
+++ b/macros.xml Tue Jun 25 17:44:17 2019 -0400
b
@@ -12,7 +12,7 @@
  <yield />
  </requirements>
  </xml>
- <token name="@VERSION@">2.3.3</token>
+ <token name="@VERSION@">2.5.2</token>
  <xml name="outputs">
         <yield />
         <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" />
b
diff -r 99810cf51f2e -r d605800d956c test-data/hmm-sites1.txt
--- a/test-data/hmm-sites1.txt Mon Apr 22 14:42:21 2019 -0400
+++ b/test-data/hmm-sites1.txt Tue Jun 25 17:44:17 2019 -0400
b
@@ -1,9 +1,11 @@
 #HMM - Sites
 # Tn-HMM
-#Console: python /home/inithello/miniconda3/envs/__transit@2.3.3/bin/transit hmm input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -tC 0.0 -r Mean
+#Console: python /home/inithello/miniconda3/envs/__transit@2.5.2/bin/transit hmm input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -tC 0.0 -r Mean
 # 
 # Mean: 225.23
 # Median: 112.00
+# Normalization: TTR
+# LOESS Correction: False
 # pins (obs): 0.548435
 # pins (est): 0.668453
 # Run length (r): 5