| Previous changeset 0:15c6da429d88 (2015-12-21) Next changeset 2:18e2e2ef0f08 (2016-07-22) |
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tool_dependencies.xml |
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| diff -r 15c6da429d88 -r d63425547b4c tool_dependencies.xml --- a/tool_dependencies.xml Mon Dec 21 06:03:13 2015 -0500 +++ b/tool_dependencies.xml Wed Jun 15 08:07:50 2016 -0400 |
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| @@ -1,29 +1,35 @@ <?xml version="1.0"?> <tool_dependency> - <package name="libxml2" version="2.9.3"> - <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="libxslt" version="1.1.28"> + <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> - <package name="libxslt" version="1.1.28"> + <package name="perl_xml_parser_expat" version="2.41"> + <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="meme" version="4.11.0"> <install version="1.0"> <actions> - <action type="download_by_url">ftp://xmlsoft.org/libxml2/libxslt-1.1.28.tar.gz</action> + <action sha256sum="5dc4841f4816ef25bdb4bd088c76606c1b42726e7d65cc417f0f8c49fe7e237f" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.0_src_all.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="libxml2" version="2.9.3" /> + <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="libxslt" version="1.1.28" /> </repository> + <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="perl_xml_parser_expat" version="2.41" /> + </repository> + </action> + <action type="shell_command"> + # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ + sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset->evt)|sprintf(evt_string, "%g", dataset->evt)|' src/display.c </action> <action type="autoconf" /> <action type="set_environment"> - <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> - <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> - <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> - <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> - <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> + <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable> </action> </actions> </install> - <readme /> + <readme> + </readme> </package> </tool_dependency> |