| Previous changeset 14:784165ccd3c1 (2017-07-07) Next changeset 16:5e4080791d90 (2017-07-24) |
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multiqc.xml |
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| diff -r 784165ccd3c1 -r d6579f50e622 multiqc.xml --- a/multiqc.xml Fri Jul 07 08:00:39 2017 -0400 +++ b/multiqc.xml Mon Jul 24 08:42:27 2017 -0400 |
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error">\n- <svg aria-hidden="true" class="octicon octicon-x" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path fill-rule="evenodd" d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48z"/></svg>\n- </button>\n- You can\'t perform that action at this time.\n- </div>\n-\n+- Fastqc\n+- Cutadapt / Trim Galore!\n+- Tophat2\n+- FeatureCounts (summary file with the column header in the first line or as metadata)\n+- Samtools (stats, flagstat, dxstats)\n+- Picard (MarkDuplicatesMetrics, CollectGCBiasMetrics, CollectInsertSizeMetrics, CollectAlignmentSummaryMetrics, CollectRnaSeqMetrics)\n+- Bismark (Alignment report file)\n+- Bowtie2 (Metrics file)\n+- HTSeq-count ("no feature" file; although the "Assigned" metric is always 0)\n+- RNA STAR (Alignment from Log.final.out, Gene counts from ReadsPerGene.out.tab)\n \n- <script crossorigin="anonymous" 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]]></help>\n+ <citations>\n+ <citation type="doi">10.1093/bioinformatics/btw354</citation>\n+ </citations>\n+</tool>\n' |