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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit ef7eb622ae8ea3a2a5aa5f5d2c9eaf41367bfef9-dirty |
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modified:
mafft.xml |
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| diff -r 5e48c4621f9f -r d71e007323d4 mafft.xml --- a/mafft.xml Fri Jul 31 19:02:11 2015 -0400 +++ b/mafft.xml Tue Aug 04 04:01:23 2015 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="rbc_mafft" name="MAFFT" version="7.221.0"> +<tool id="rbc_mafft" name="MAFFT" version="7.221.1"> <description>Multiple alignment program for amino acid or nucleotide sequences</description> <requirements> <requirement type="package" version="7.221">mafft</requirement> @@ -23,6 +23,8 @@ ## specify threads to use --thread \${GALAXY_SLOTS:-1} + + $adjustdirection #if $outputFormat.value == 'clustalw' --clustalout @@ -64,6 +66,10 @@ <when value="mafft-qinsi"/> <when value="mafft-xinsi"/> </conditional> + <param name="adjustdirection" type="select" display="radio" label="Direction of nucleotide sequences" help="Generate reverse complement sequences, as necessary, and align them together with the remaining sequences"> + <option value="--adjustdirection">adjust direction</option> + <option value=" " selected="true">do not adjust direction</option> + </param> <param name="outputFormat" type="select" label="Output format" help="Either FASTA or ClustalW"> <option value="fasta" selected="true">FASTA</option> <option value="clustalw">ClustalW</option> @@ -150,6 +156,8 @@ --auto Automatically selects an appropriate strategy from L-INS-i, FFT-NS-i and FFT-NS-2, according to data size. Default: off (always FFT-NS-2) +--adjustdirection + Generate reverse complement sequences, as necessary, and align them together with the remaining sequences. In the case of protein alignment, these options are just ignored. ]]> </help> <citations> |