| Previous changeset 5:01748da366c3 (2016-04-14) Next changeset 7:b9b2be216c05 (2016-04-14) |
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Commit message:
Uploaded |
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modified:
pieplot_macs/pieplots_macs.py pieplot_macs/pieplots_macs.xml |
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| diff -r 01748da366c3 -r d7baa700a930 pieplot_macs/pieplots_macs.py --- a/pieplot_macs/pieplots_macs.py Thu Apr 14 17:40:18 2016 -0400 +++ b/pieplot_macs/pieplots_macs.py Thu Apr 14 17:45:12 2016 -0400 |
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| @@ -41,7 +41,16 @@ chrom = words[2] - if not macsFlag: + if macsFlag: + print "MacsFlag off" + start = int(words[3])-1 + dist = abs(int(words[12])) + maptype = words[14] + if maptype == 'gene': + maptype = words[15] + + else: + print "macsFlag on" try: start = int(words[3]) dist = abs(int(words[15])) @@ -51,13 +60,8 @@ except: pass - else: - start = int(words[3])-1 - dist = abs(int(words[12])) - maptype = words[14] - if maptype == 'gene': - maptype = words[15] - + print "dist:" + print dist if chrom not in peaks: #new chrom @@ -120,6 +124,8 @@ args=parser.parse_args() + print args.MACS + map_peaks(args.genefile, args.peakfile, args.outfile, args.MACS) |
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| diff -r 01748da366c3 -r d7baa700a930 pieplot_macs/pieplots_macs.xml --- a/pieplot_macs/pieplots_macs.xml Thu Apr 14 17:40:18 2016 -0400 +++ b/pieplot_macs/pieplots_macs.xml Thu Apr 14 17:45:12 2016 -0400 |
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| @@ -18,5 +18,5 @@ <outputs> <data name="out" format="pdf" hidden="false" /> </outputs> - <help>help</help> + <help></help> </tool> |