| Previous changeset 55:e23909ae6676 (2017-08-10) Next changeset 57:119dad795f32 (2017-08-10) |
|
Commit message:
Uploaded |
|
modified:
GRsetFromGEO/GRsetFromGEO.R |
| b |
| diff -r e23909ae6676 -r d7cf4a35f827 GRsetFromGEO/GRsetFromGEO.R --- a/GRsetFromGEO/GRsetFromGEO.R Thu Aug 10 06:26:46 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.R Thu Aug 10 06:42:47 2017 -0400 |
| [ |
| @@ -1,13 +1,12 @@ +require(minfi, quietly = TRUE) + options(warn = -1) -options('download.file.method.GEOquery' = 'wget') -options('GEOquery.inmemory.gpl'=FALSE) - args <- commandArgs(trailingOnly = TRUE) input = args[1] output = args[2] -GRset <- minfi::getGenomicRatioSetFromGEO(input) +GRset <- getGenomicRatioSetFromGEO(input) save(GRset,file = output) |