| Previous changeset 13:7b9fafe32c86 (2024-03-14) Next changeset 15:f3ad813a58a3 (2024-07-31) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de |
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modified:
macros.xml normalize.xml |
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| diff -r 7b9fafe32c86 -r d844935c906c macros.xml --- a/macros.xml Thu Mar 14 15:37:29 2024 +0000 +++ b/macros.xml Sat May 18 18:31:20 2024 +0000 |
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| @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">1.9.6</token> - <token name="@VERSION_SUFFIX@">2</token> - <token name="@profile@">22.05</token> + <token name="@VERSION_SUFFIX@">3</token> + <token name="@profile@">21.09</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement> |
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| diff -r 7b9fafe32c86 -r d844935c906c normalize.xml --- a/normalize.xml Thu Mar 14 15:37:29 2024 +0000 +++ b/normalize.xml Sat May 18 18:31:20 2024 +0000 |
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| @@ -322,7 +322,7 @@ Similar functions are used, for example, by Seurat, Cell Ranger or SPRING. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.normalize_per_cell.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.normalize_per_cell.html>`__ Normalization and filtering as of Zheng et al. (2017), the Cell Ranger R Kit of 10x Genomics (`pp.recipe_zheng17`) @@ -341,7 +341,7 @@ - scale to unit variance and shift to zero mean More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_zheng17.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.recipe_zheng17.html>`__ Normalization and filtering as of Weinreb et al (2017) (`pp.recipe_weinreb17`) @@ -350,7 +350,7 @@ Expects non-logarithmized data. If using logarithmized data, pass `log=False`. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_weinreb17.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.recipe_weinreb17.html>`__ Normalization and filtering as of Seurat et al (2015) (`pp.recipe_seurat`) @@ -361,7 +361,7 @@ Expects non-logarithmized data. If using logarithmized data, pass `log=False`. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_seurat.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.recipe_seurat.html>`__ Markov Affinity-based Graph Imputation of Cells (MAGIC) as of Van Dijk D et al. (2018) (`external.pp.magic`) @@ -375,7 +375,7 @@ - Secondly, data diffusion is applied in the PCA space, rather than the data space, for speed and memory improvements. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.external.pp.magic.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.external.pp.magic.html>`__ ]]></help> <expand macro="citations"/> |