| Previous changeset 0:065938419efe (2015-08-17) Next changeset 2:f03c7ba8d8bc (2017-04-26) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/taxonomy/kraken2tax/ commit 6ae04a550dca76f641cb8ea82408fe3b068df960-dirty |
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modified:
kraken2tax.xml |
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| diff -r 065938419efe -r d844fdcce44e kraken2tax.xml --- a/kraken2tax.xml Mon Aug 17 11:03:38 2015 -0400 +++ b/kraken2tax.xml Thu Oct 08 12:34:17 2015 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="Kraken2Tax" name="Convert Kraken" version="1.0"> +<tool id="Kraken2Tax" name="Convert Kraken" version="1.1"> <description>data to Galaxy taxonomy representation</description> <requirements> <requirement type="package" version="4.1.0">gnu_awk</requirement> @@ -6,7 +6,7 @@ </requirements> <command> <![CDATA[ - awk '{ print \$${read_name}, \$${tax_id} }' OFS="\t" "${input}" | taxonomy-reader ${ncbi_taxonomy.fields.path}/names.dmp ${ncbi_taxonomy.fields.path}/nodes.dmp 1 > "${out_file}" + awk '{ print \$${read_name}, \$${tax_id} }' OFS="\t" "${input}" | taxonomy-reader "${ncbi_taxonomy.fields.path}/names.dmp" "${ncbi_taxonomy.fields.path}/nodes.dmp" 1 > "${out_file}" ]]> </command> <inputs> |