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modified:
tassel/tassel.sh |
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| diff -r 1dc58d808e72 -r d8a46ae7ee8a tassel/tassel.sh --- a/tassel/tassel.sh Thu Feb 26 01:18:27 2015 -0500 +++ b/tassel/tassel.sh Fri Jul 03 04:37:26 2015 -0400 |
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| @@ -7,12 +7,18 @@ log1=$5; galaxyOutDir=$6; +version=$(java -version 2>&1 | grep version) +if [[ ! $version =~ 1.8 ]]; then + echo "Java found: $version. Tassel 5.0 requires java 1.8..." >&2 + exit 1 +fi mkdir $galaxyOutDir # Suppression des 6 premiers arguments de la liste des arguments $@ shift; shift; shift; shift; shift; shift; + if [[ $analyseType == glm ]] then run_pipeline.pl $* >> $log1 2>&1 |