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Commit message:
planemo upload commit 4f3721ca835a97f76cb7557d742651c0d7f101a0 |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r d8c8c3dc8f9a tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Aug 08 12:51:10 2016 -0400 |
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| @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="spades" version="3.9.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.9.0/SPAdes-3.9.0-Linux.tar.gz</action> + <!-- Copying the whole bin folder --> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="make_directory">$INSTALL_DIR/share</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>share</source_directory> + <destination_directory>$INSTALL_DIR/share</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +This installs SPAdes 3.9. + +See manual here http://spades.bioinf.spbau.ru/release3.9.0/manual.html +See also here http://bioinf.spbau.ru/en/spades + +Author : Philip Mabon +Original author : Lionel Guy + </readme> + </package> +</tool_dependency> + |