Repository 'pirna_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/romaingred/pirna_pipeline

Changeset 50:d9059a181872 (2017-12-01)
Previous changeset 49:71ac58e0d5be (2017-12-01) Next changeset 51:6bd3e935d32b (2017-12-01)
Commit message:
Uploaded
modified:
bin/piPipe.pl
b
diff -r 71ac58e0d5be -r d9059a181872 bin/piPipe.pl
--- a/bin/piPipe.pl Fri Dec 01 08:54:25 2017 -0500
+++ b/bin/piPipe.pl Fri Dec 01 09:33:09 2017 -0500
[
@@ -119,7 +119,7 @@
  my $fastq_resized = $dir_fq.$name.'_'.$min.'-'.$max.'.fastq';
  size_distribution (  $fastq[$child], $fastq_resized, $size_dir, $min, $max );
 
- my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'sam';
+ my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'.sam';
  my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_unique.sam';
  my $fastq_prefix = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max;