Repository 'kraken2'
hg clone https://toolshed.g2.bx.psu.edu/repos/dfornika/kraken2

Changeset 11:da1a2d98dab1 (2019-03-04)
Previous changeset 10:a74785cdf5e3 (2019-03-04) Next changeset 12:269ea4b78bbb (2019-03-04)
Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty
modified:
macros.xml
b
diff -r a74785cdf5e3 -r da1a2d98dab1 macros.xml
--- a/macros.xml Mon Mar 04 17:25:29 2019 -0500
+++ b/macros.xml Mon Mar 04 17:29:41 2019 -0500
[
@@ -15,5 +15,5 @@
             <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
         </citations>
     </xml>
-    <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DB_PATH='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DB_PATH='${kraken2_database.fields.path}'; fi</token>
+    <token name="@SET_DATABASE_PATH@">export KRAKEN2_DB_PATH='${kraken2_database.fields.path}'</token>
 </macros>