| Previous changeset 3:4f744d3aaf0b (2017-09-24) Next changeset 5:2ec6529e555d (2018-06-02) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/probecoverage commit 2b4a222804a40730abdaec6fb6aefc2295e89e11 |
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modified:
probecoverage.r probecoverage.xml test-data/graph_pysam.pdf |
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| diff -r 4f744d3aaf0b -r daec4df60281 probecoverage.r --- a/probecoverage.r Sun Sep 24 14:47:11 2017 -0400 +++ b/probecoverage.r Sun Sep 24 18:10:12 2017 -0400 |
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| @@ -40,7 +40,12 @@ ## end of function ## let's do a dataframe before plotting -maxdepth <- trunc(max(Table[,5:length(Table)]/(Table$end-Table$start))) + 20 +if (args$method == 'bedtools') { + maxdepth <- trunc(max(Table[,5:length(Table)]/(Table$end-Table$start))) + 20 + } else { + maxdepth <- trunc(max(Table[,5:length(Table)])) + 20 + } + graphpoints <- data.frame(1:maxdepth) i <- 5 for (colonne in colnames(Table)[5:length(colnames(Table))]) { |
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| diff -r 4f744d3aaf0b -r daec4df60281 probecoverage.xml --- a/probecoverage.xml Sun Sep 24 14:47:11 2017 -0400 +++ b/probecoverage.xml Sun Sep 24 18:10:12 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="probecoverage" name="Probe Coverage" version="0.4.0"> +<tool id="probecoverage" name="Probe Coverage" version="0.4.1"> <description></description> <requirements> <requirement type="package" version="1.4.1">samtools</requirement> |
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| diff -r 4f744d3aaf0b -r daec4df60281 test-data/graph_pysam.pdf |
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| Binary file test-data/graph_pysam.pdf has changed |