Repository 'emboss_5'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/emboss_5

Changeset 16:dba489bfcd62 (2019-12-02)
Previous changeset 15:dc492eb6a4fc (2019-01-28) Next changeset 17:ce385837c160 (2020-11-20)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
modified:
emboss_cpgplot_wrapper.pl
emboss_single_outputfile_wrapper.pl
macros.xml
removed:
emboss_infoseq_wrapper.pl
emboss_multiple_outputfile_wrapper.pl
b
diff -r dc492eb6a4fc -r dba489bfcd62 emboss_cpgplot_wrapper.pl
--- a/emboss_cpgplot_wrapper.pl Mon Jan 28 14:50:36 2019 -0500
+++ b/emboss_cpgplot_wrapper.pl Mon Dec 02 21:13:50 2019 -0500
b
@@ -1,5 +1,5 @@
-#! /usr/bin/perl -w
 use strict;
+use warnings;
 use File::Copy;
 
 my $cmd_string = join (" ",@ARGV);
b
diff -r dc492eb6a4fc -r dba489bfcd62 emboss_infoseq_wrapper.pl
--- a/emboss_infoseq_wrapper.pl Mon Jan 28 14:50:36 2019 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
[
@@ -1,9 +0,0 @@
-#! /usr/bin/perl -w
-use strict;
-
-my $cmd_string = join (" ",@ARGV);
-my $results = `$cmd_string`;
-if ($ARGV[6]=~/yes/)
-{
- print "Extension: html\n";
-}
b
diff -r dc492eb6a4fc -r dba489bfcd62 emboss_multiple_outputfile_wrapper.pl
--- a/emboss_multiple_outputfile_wrapper.pl Mon Jan 28 14:50:36 2019 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
[
@@ -1,19 +0,0 @@
-#! /usr/bin/perl -w
-use strict;
-
-my $cmd_string = join (" ",@ARGV);
-my $results = `$cmd_string`;
-my @files = split("\n",$results);
-foreach my $thisLine (@files)
-{
- if ($thisLine =~ /Created /)
- {
- $thisLine =~ /[\w|\.]+$/;
- $thisLine =$&;
- print "outfile: $thisLine\n";
- }
- else
- {
- print $thisLine,"\n";
- }
-}
b
diff -r dc492eb6a4fc -r dba489bfcd62 emboss_single_outputfile_wrapper.pl
--- a/emboss_single_outputfile_wrapper.pl Mon Jan 28 14:50:36 2019 -0500
+++ b/emboss_single_outputfile_wrapper.pl Mon Dec 02 21:13:50 2019 -0500
b
@@ -1,5 +1,5 @@
-#! /usr/bin/perl -w
 use strict;
+use warnings;
 use File::Copy;
 
 my $cmd_string = join (" ",@ARGV);
b
diff -r dc492eb6a4fc -r dba489bfcd62 macros.xml
--- a/macros.xml Mon Jan 28 14:50:36 2019 -0500
+++ b/macros.xml Mon Dec 02 21:13:50 2019 -0500
b
@@ -3,6 +3,7 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">emboss</requirement>
+            <requirement type="package" version="5.26">perl</requirement>
         </requirements>
     </xml>
     <xml name="stdio">