| Previous changeset 77:7bd04a4f29df (2017-06-20) Next changeset 79:acf45085f9d4 (2017-06-20) |
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Commit message:
Uploaded 20170620 |
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modified:
loadandplot.xml |
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added:
._loadandplot.R ._plotwithscale.R ._testandplot.R test-data/._.DS_Store test-data/input/._Controls_regions.bed test-data/input/._Elements1_regions.bed test-data/input/._Elements2_regions.bed test-data/input/._Elements3_regions.bed test-data/input/._Feature1.bed test-data/input/._Feature2.bed test-data/input/._features.header.bed.txt test-data/input/._regions.header.txt test-data/output_loadandplot/._iwtomics.loadandplot.RData test-data/output_loadandplot/._iwtomics.loadandplot.features.txt test-data/output_loadandplot/._iwtomics.loadandplot.pdf test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf test-data/output_testandplot/._iwtomics.testandplot.RData test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf test-data/output_testandplot/._iwtomics.testandplot.tests.txt |
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| diff -r 7bd04a4f29df -r dc2707da8ba4 loadandplot.xml --- a/loadandplot.xml Tue Jun 20 12:57:30 2017 -0400 +++ b/loadandplot.xml Tue Jun 20 13:07:55 2017 -0400 |
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| @@ -15,7 +15,7 @@ regionsgalaxyids='c(${region_galaxyids})' #set region_names = '|'.join( [ str( $r.name ) for $r in $regions ] ) regionsfilenames='${region_names}' - #set region_header = $regionsheadersection.regionsheader + #set region_header = $regionsheader #if $region_header != "": regionsheaderfile='${region_header}' #end if @@ -26,7 +26,7 @@ featuresgalaxyids='c(${feature_galaxyids})' #set feature_names = '|'.join( [ str( $f.name ) for $f in $features ] ) featuresfilenames='${feature_names}' - #set feature_header = $featuresheadersection.featuresheader + #set feature_header = $featuresheader #if $feature_header != "": featuresheaderfile='${feature_header}' #end if @@ -74,15 +74,11 @@ <inputs> <!-- regions --> <param format="tabular" name="regions" type="data" label="Select region files" multiple="true" help="" /> - <section name="regionsheadersection" title="Insert header file for regions (optional)" expanded="false" help="Tabular file. Column 1: names of the region files; Column 2: unique identifiers of the region datasets (spaces and special characters are not allowed); Column 3: name of the region datasets to be used in the output."> - <param format="tabular" name="regionsheader" type="data" label="Select header file" optional="true" /> - </section> + <param format="tabular" name="regionsheader" type="data" label="Insert header file for regions (optional)" optional="true" help="Tabular file. Column 1: names of the region files; Column 2: unique identifiers of the region datasets (spaces and special characters are not allowed); Column 3: name of the region datasets to be used in the output." /> <!-- features --> <param format="tabular" name="features" type="data" label="Select feature files" multiple="true" help="" /> - <section name="featuresheadersection" title="Insert header file for features (optional)" expanded="false" help="Tabular file. Column 1: names of the feature files; Column 2: unique identifiers of the features (spaces and special characters are not allowed); Column 3: name of the features to be used in the output."> - <param format="tabular" name="featuresheader" type="data" label="Select header file" optional="true" /> - </section> + <param format="tabular" name="featuresheader" type="data" label="Insert header file for features (optional)" optional="true" help="Tabular file. Column 1: names of the feature files; Column 2: unique identifiers of the features (spaces and special characters are not allowed); Column 3: name of the features to be used in the output." /> <!-- zero-base one-base --> <param name="zerobased" type="select" label="Start positions are:" multiple="false" help=""> |
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