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modified:
report_clonality/r_wrapper.sh |
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| diff -r 7b8147b61a34 -r dc6c53a11d7d report_clonality/r_wrapper.sh --- a/report_clonality/r_wrapper.sh Tue Mar 28 08:48:29 2017 -0400 +++ b/report_clonality/r_wrapper.sh Tue Mar 28 08:51:34 2017 -0400 |
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| @@ -196,11 +196,11 @@ for sample in $samples; do echo "<div class='tabbertab' title='$sample'><table border='1'><center>" >> $outputFile if [[ "$useD" == "true" ]] ; then - echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.pdf'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile + echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.svg'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile fi - echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.pdf'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile + echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.svg'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile if [[ "$useD" == "true" ]] ; then - echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.pdf'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile + echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.svg'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile fi echo "<center></table></div>" >> $outputFile count=$((count+1)) |