| Previous changeset 11:de0d85537ee3 (2017-04-07) Next changeset 13:91c71f3808f3 (2018-09-18) |
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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1 |
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modified:
README.rst abims_xcms_fillPeaks.xml macros.xml |
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| diff -r de0d85537ee3 -r dcb9041cb9ea README.rst --- a/README.rst Fri Apr 07 07:37:05 2017 -0400 +++ b/README.rst Wed Nov 29 09:47:20 2017 -0500 |
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| @@ -2,6 +2,10 @@ Changelog/News -------------- +**Version 2.1.1 - 29/11/2017** + +- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C + **Version 2.1.0 - 07/02/2017** - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom) |
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| diff -r de0d85537ee3 -r dcb9041cb9ea abims_xcms_fillPeaks.xml --- a/abims_xcms_fillPeaks.xml Fri Apr 07 07:37:05 2017 -0400 +++ b/abims_xcms_fillPeaks.xml Wed Nov 29 09:47:20 2017 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.0"> +<tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.1"> <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description> @@ -226,11 +226,11 @@ xset.variableMetadata.tsv : tabular format - | Table containing information about ions; can be used as one input of **Quality_Metrics** or **Generic_filter* modules. + | Table containing information about ions; can be used as one input of **Quality_Metrics** or **Generic_filter** modules. xset.dataMatrix.tsv : tabular format - | Table containing ions' intensities; can be used as one input of **Quality_Metrics** or **Generic_filter* modules. + | Table containing ions' intensities; can be used as one input of **Quality_Metrics** or **Generic_filter** modules. ------ @@ -268,6 +268,10 @@ Changelog/News -------------- +**Version 2.1.1 - 29/11/2017** + +- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C + **Version 2.1.0 - 07/02/2017** - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom) |
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| diff -r de0d85537ee3 -r dcb9041cb9ea macros.xml --- a/macros.xml Fri Apr 07 07:37:05 2017 -0400 +++ b/macros.xml Wed Nov 29 09:47:20 2017 -0500 |
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| @@ -19,7 +19,7 @@ </xml> <token name="@COMMAND_XCMS_SCRIPT@"> - LANG=C Rscript $__tool_directory__/xcms.r + LC_ALL=C Rscript $__tool_directory__/xcms.r </token> <token name="@COMMAND_LOG_EXIT@"> |