| Previous changeset 0:7ed4b55b11f7 (2022-07-19) Next changeset 2:ce22e846c5e4 (2024-06-10) |
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Commit message:
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit d20d6f5d08b43de71182459f8a6452c564a5becc |
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modified:
main_macros.xml scimap_spatial.py |
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| diff -r 7ed4b55b11f7 -r dcfcad35e847 main_macros.xml --- a/main_macros.xml Tue Jul 19 20:29:22 2022 +0000 +++ b/main_macros.xml Mon Aug 29 23:55:18 2022 +0000 |
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| @@ -1,11 +1,11 @@ <macros> - <token name="@TOOL_VERSION@">0.0.1</token> + <token name="@TOOL_VERSION@">0.17.7</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">20.01</token> <xml name="scimap_requirements"> <requirements> - <container type="docker">quay.io/goeckslab/scimap:0.17.7</container> + <container type="docker">quay.io/goeckslab/scimap:@TOOL_VERSION@</container> <yield /> </requirements> </xml> @@ -15,7 +15,11 @@ <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> </stdio> </xml> - + <xml name="citations"> + <citations> + <citation type="doi">10.1158/2159-8290.CD-21-1357</citation> + </citations> + </xml> <xml name="scimap_spatial_options" token_label="spatial_aggregate"> <section name="options" title="Advanced Options" expanded="false"> <param argument="x_coordinate" type="text" value="X_centroid" optional="false" label="Column name containing the x-coordinates values" /> |
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| diff -r 7ed4b55b11f7 -r dcfcad35e847 scimap_spatial.py --- a/scimap_spatial.py Tue Jul 19 20:29:22 2022 +0000 +++ b/scimap_spatial.py Mon Aug 29 23:55:18 2022 +0000 |
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| @@ -45,6 +45,9 @@ tool_func(adata, **options) + if tool == 'spatial_lda': + adata.uns.pop('spatial_lda_model') + adata.write(output) |